RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ZDHHC7Q9NXF8 308 aa14.29□□□□□ -0.12
SS18-219ENST00000581570 FBXO4Q9UKT5 387 aa14.29□□□□□ -0.12
SS18-219ENST00000581570 NAP1L2Q9ULW6 460 aaPredicted RBP14.29□□□□□ -0.12
SS18-219ENST00000581570 KANSL1LA0AUZ9 987 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 SPTLC1O15269 473 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 LAMTOR5O43504 91 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 EDIL3O43854 480 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 EFEMP2O95967 443 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 C1RP00736 705 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 NCLP19338 710 aaKnown RBP14.28□□□□□ -0.12
SS18-219ENST00000581570 USP11P51784 963 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 GPC5P78333 572 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 UBXN11Q5T124 520 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 RNF20Q5VTR2 975 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 C2orf16Q68DN1 1984 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 RNF168Q8IYW5 571 aaPredicted RBP14.28□□□□□ -0.12
SS18-219ENST00000581570 BICD2Q8TD16 824 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 ATRIPQ8WXE1 791 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 ESYT1Q9BSJ8 1104 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 RPP25Q9BUL9 199 aaKnown RBP14.28□□□□□ -0.12
SS18-219ENST00000581570 UBN1Q9NPG3 1134 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 ANO2Q9NQ90 1003 aa14.28□□□□□ -0.12
SS18-219ENST00000581570 ZFP37Q9Y6Q3 630 aaPredicted RBP14.28□□□□□ -0.12
SS18-219ENST00000581570 CCDC196A0A1B0GTZ2 297 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 TGM5O43548 720 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 PSMD10O75832 226 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 ITGA4P13612 1032 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 FSHRP23945 695 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 HOXA11P31270 313 aaPredicted RBP14.27□□□□□ -0.13
SS18-219ENST00000581570 RCAN1P53805 252 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 CSTF1Q05048 431 aaKnown RBP14.27□□□□□ -0.13
SS18-219ENST00000581570 SNW1Q13573 536 aaKnown RBP14.27□□□□□ -0.13
SS18-219ENST00000581570 SRGAP1Q7Z6B7 1085 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 CNNM3Q8NE01 707 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 SECISBP2LQ93073 1101 aaKnown RBP14.27□□□□□ -0.13
SS18-219ENST00000581570 CHST7Q9NS84 486 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 COL4A3BPQ9Y5P4 624 aa14.27□□□□□ -0.13
SS18-219ENST00000581570 PRR5-ARHGAP8B1AHC4 643 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 PRPF3O43395 683 aaKnown RBP14.26□□□□□ -0.13
SS18-219ENST00000581570 NR1I2O75469 434 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 SRGAP2CP0DJJ0 459 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 ARHGAP8P85298 464 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 PRKCQQ04759 706 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 UBXN2BQ14CS0 331 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 SLC44A4Q53GD3 710 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 LILRA6Q6PI73 481 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 PARM1Q6UWI2 310 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 ANO5Q75V66 913 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 GLYCTKQ8IVS8 523 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 SMG8Q8ND04 991 aaKnown RBP14.26□□□□□ -0.13
SS18-219ENST00000581570 FGF14Q92915 247 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 GAD1Q99259 594 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 DDX23Q9BUQ8 820 aaKnown RBP14.26□□□□□ -0.13
SS18-219ENST00000581570 COLEC11Q9BWP8 271 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 MINDY3Q9H8M7 445 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.26□□□□□ -0.13
SS18-219ENST00000581570 MIOSQ9NXC5 875 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 FNIP2Q9P278 1114 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 CDV3Q9UKY7 258 aaKnown RBP14.26□□□□□ -0.13
SS18-219ENST00000581570 PCDHGA2Q9Y5H1 932 aa14.26□□□□□ -0.13
SS18-219ENST00000581570 ARL5CA6NH57 179 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 FAM170BA6NMN3 283 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 F8W810 466 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 ZMYND10O75800 440 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 PSMC5P62195 406 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 AKAP17AQ02040 695 aaKnown RBP14.25□□□□□ -0.13
SS18-219ENST00000581570 LMNB2Q03252 620 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 DSC1Q08554 894 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 MLF2Q15773 248 aaPredicted RBP14.25□□□□□ -0.13
SS18-219ENST00000581570 USP41Q3LFD5 358 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 Q4G0T1 1027 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 PLA2G4FQ68DD2 849 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 B3GNT9Q6UX72 402 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 GRASPQ7Z6J2 395 aaPredicted RBP14.25□□□□□ -0.13
SS18-219ENST00000581570 PRPF31Q8WWY3 499 aaKnown RBP14.25□□□□□ -0.13
SS18-219ENST00000581570 B3GALT6Q96L58 329 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 OSBPL6Q9BZF3 934 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 ZSCAN32Q9NX65 697 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 CDH7Q9ULB5 785 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 MTF2Q9Y483 593 aaPredicted RBP14.25□□□□□ -0.13
SS18-219ENST00000581570 IPPQ9Y573 584 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 OTOGLQ3ZCN5 2332 aa14.25□□□□□ -0.13
SS18-219ENST00000581570 NCOR2Q9Y618 2525 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 CACNA1BQ00975 2339 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 WDR87Q6ZQQ6 2873 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 DCDC2BA2VCK2 349 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 RPL17P18621 184 aaKnown RBP14.24□□□□□ -0.13
SS18-219ENST00000581570 MLH1P40692 756 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 MAGEA9P43362 315 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 SCNN1GP51170 649 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 NPEPPSP55786 919 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 FGD1P98174 961 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 FUT10Q6P4F1 479 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 MTSS1LQ765P7 747 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 GPR65Q8IYL9 337 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 ZBTB44Q8NCP5 570 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 CCDC148Q8NFR7 591 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 PSPC1Q8WXF1 523 aaKnown RBP14.24□□□□□ -0.13
SS18-219ENST00000581570 SLC7A3Q8WY07 619 aa14.24□□□□□ -0.13
SS18-219ENST00000581570 TMEM143Q96AN5 459 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms