RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CTDNEP1O95476 244 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 CNPP09543 421 aaKnown RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 KLRC2P26717 231 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 AXLP30530 894 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 CLCN4P51793 760 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 PTENP60484 403 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 CTTNQ14247 550 aaKnown RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 MXD4Q14582 209 aaPredicted RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 EMC2Q15006 297 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 EARS2Q5JPH6 523 aaKnown RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 TMC5Q6UXY8 1006 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 POTEDQ86YR6 584 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 IFNLR1Q8IU57 520 aaPredicted RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 TPH2Q8IWU9 490 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 TDRD5Q8NAT2 981 aaKnown RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 SMG8Q8ND04 991 aaKnown RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 WASF1Q92558 559 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 DYDC2Q96IM9 177 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 FAM193BQ96PV7 902 aaPredicted RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 SFXN1Q9H9B4 322 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 MRPL17Q9NRX2 175 aaKnown RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 ORC3Q9UBD5 711 aaPredicted RBP11.82□□□□□ -0.52
RFFL-209ENST00000581265 PCDHA12Q9UN75 941 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 TSPAN1O60635 241 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 ERLIN2O94905 339 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 EFEMP2O95967 443 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 POMCP01189 267 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 SOD2P04179 222 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 ASGR2P07307 311 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 ITGA4P13612 1032 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 FDPSP14324 419 aaKnown RBP11.81□□□□□ -0.52
RFFL-209ENST00000581265 ANAPC15P60006 121 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 CYP4A11Q02928 519 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 NCBP1Q09161 790 aaKnown RBP11.81□□□□□ -0.52
RFFL-209ENST00000581265 NR5A1Q13285 461 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 ANKRD1Q15327 319 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 NCAPH2Q6IBW4 605 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 C15orf39Q6ZRI6 1047 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 OTOP3Q7RTS5 596 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 COLGALT2Q8IYK4 626 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 FLCNQ8NFG4 579 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 TNFRSF25Q93038 417 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 ACSF2Q96CM8 615 aaPredicted RBP11.81□□□□□ -0.52
RFFL-209ENST00000581265 CCDC51Q96ER9 411 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 MTRQ99707 1265 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 RNF39Q9H2S5 420 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 XPNPEP1Q9NQW7 623 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 BMP2KQ9NSY1 1161 aaPredicted RBP11.81□□□□□ -0.52
RFFL-209ENST00000581265 ANKEF1Q9NU02 776 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 SSX2IPQ9Y2D8 614 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 IPPQ9Y573 584 aa11.81□□□□□ -0.52
RFFL-209ENST00000581265 RIF1Q5UIP0 2472 aaKnown RBP11.8□□□□□ -0.52
RFFL-209ENST00000581265 FAM205CA6NFA0 338 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 ARL5CA6NH57 179 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 DTNBO60941 627 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 DGAT1O75907 488 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 XRCC6P12956 609 aaKnown RBP eCLIP11.8□□□□□ -0.52
RFFL-209ENST00000581265 KRT2P35908 639 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 ARL2P36404 184 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 CLCN5P51795 746 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 DSC1Q08554 894 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 TFDP1Q14186 410 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 KIAA0319Q5VV43 1072 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 NOTUMQ6P988 496 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 RNF168Q8IYW5 571 aaPredicted RBP11.8□□□□□ -0.52
RFFL-209ENST00000581265 CMASQ8NFW8 434 aaPredicted RBP11.8□□□□□ -0.52
RFFL-209ENST00000581265 FEZF2Q8TBJ5 459 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 RPS6KC1Q96S38 1066 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 GAD1Q99259 594 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 EIF2AK1Q9BQI3 630 aaKnown RBP11.8□□□□□ -0.52
RFFL-209ENST00000581265 EIF2AQ9BY44 585 aaKnown RBP11.8□□□□□ -0.52
RFFL-209ENST00000581265 NFKBIZQ9BYH8 718 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 RHOBTB2Q9BYZ6 727 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 CSRNP2Q9H175 543 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 SMOC2Q9H3U7 446 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 MARCH5Q9NX47 278 aa11.8□□□□□ -0.52
RFFL-209ENST00000581265 INO80B-WBP1J3KQ70 363 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 TEX28O15482 410 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 C1RP00736 705 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 LMNAP02545 664 aaKnown RBP11.79□□□□□ -0.52
RFFL-209ENST00000581265 SSBP05455 408 aaKnown RBP eCLIP11.79□□□□□ -0.52
RFFL-209ENST00000581265 MBTD1Q05BQ5 628 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 AMHR2Q16671 573 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 CYP26C1Q6V0L0 522 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 CCDC149Q6ZUS6 474 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 TAS1R1Q7RTX1 841 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 GPR65Q8IYL9 337 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 SEMA4AQ9H3S1 761 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 TTC12Q9H892 705 aaPredicted RBP11.79□□□□□ -0.52
RFFL-209ENST00000581265 RXFP1Q9HBX9 757 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 BRMS1Q9HCU9 246 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 CHST7Q9NS84 486 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 MIOSQ9NXC5 875 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 DPP7Q9UHL4 492 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 GIT1Q9Y2X7 761 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 PRG3Q9Y2Y8 225 aaPredicted RBP11.79□□□□□ -0.52
RFFL-209ENST00000581265 HES2Q9Y543 173 aa11.79□□□□□ -0.52
RFFL-209ENST00000581265 A0A1B0GUA9 196 aa11.78□□□□□ -0.52
RFFL-209ENST00000581265 SPDYE4A6NLX3 237 aa11.78□□□□□ -0.52
RFFL-209ENST00000581265 C2CD2LO14523 706 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms