RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 GNAT2P19087 354 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 MTNR1BP49286 362 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 R3HDM1Q15032 1099 aaKnown RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 CDSNQ15517 529 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 ADRM1Q16186 407 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 GJC2Q5T442 439 aaPredicted RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 MBNL2Q5VZF2 373 aaKnown RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 GSPT2Q8IYD1 628 aaKnown RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 THEMISQ8N1K5 641 aaPredicted RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 ZNF480Q8WV37 535 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 RIN2Q8WYP3 895 aaPredicted RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 IL17RAQ96F46 866 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 CDC5LQ99459 802 aaKnown RBP8.57□□□□□ -1.04
SS18-214ENST00000580003 GREM2Q9H772 168 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 MKS1Q9NXB0 559 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 GIT1Q9Y2X7 761 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 TRIM75PA6NK02 468 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 C1QTNF3-AMACRE9PGA6 284 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 IPO13O94829 963 aaKnown RBP8.56□□□□□ -1.04
SS18-214ENST00000580003 MT-CO1P00395 513 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 NCLP19338 710 aaKnown RBP8.56□□□□□ -1.04
SS18-214ENST00000580003 IARSP41252 1262 aaKnown RBP8.56□□□□□ -1.04
SS18-214ENST00000580003 GZMKP49863 264 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 GPR156Q8NFN8 814 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 GPATCH3Q96I76 525 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 ADI1Q9BV57 179 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 ENKD1Q9H0I2 346 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 CCDC8Q9H0W5 538 aaPredicted RBP8.56□□□□□ -1.04
SS18-214ENST00000580003 HOMER2Q9NSB8 354 aa8.56□□□□□ -1.04
SS18-214ENST00000580003 hCG_2014768A0A024R1R8 64 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 HOXA3O43365 443 aaPredicted RBP8.55□□□□□ -1.04
SS18-214ENST00000580003 GASTP01350 101 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 MYBL2P10244 700 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 AGXTP21549 392 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 ANAPC15P60006 121 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 ABCB5Q2M3G0 1257 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 INAVAQ3KP66 663 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 SPDYAQ5MJ70 313 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 CBARPQ8N350 705 aaPredicted RBP8.55□□□□□ -1.04
SS18-214ENST00000580003 C1orf162Q8NEQ5 155 aaPredicted RBP8.55□□□□□ -1.04
SS18-214ENST00000580003 SH3RF3Q8TEJ3 882 aaPredicted RBP8.55□□□□□ -1.04
SS18-214ENST00000580003 SSH1Q8WYL5 1049 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 RBM12Q9NTZ6 932 aaKnown RBP8.55□□□□□ -1.04
SS18-214ENST00000580003 GPRC5DQ9NZD1 345 aa8.55□□□□□ -1.04
SS18-214ENST00000580003 WASHC2CQ9Y4E1 1318 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 ITGA10O75578 1167 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 STC2O76061 302 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 INSRRP14616 1297 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 ADSLP30566 484 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 MALLQ13021 153 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 CRHR2Q13324 411 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 MRPL49Q13405 166 aaKnown RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 FAM214AQ32MH5 1076 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 SPTY2D1Q68D10 685 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 PDZD4Q76G19 769 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 APBB1IPQ7Z5R6 666 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 ELOA2Q8IYF1 753 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 FAXDC2Q96IV6 333 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 ZNF277Q9NRM2 450 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 HECAQ9UBI9 543 aaPredicted RBP8.54□□□□□ -1.04
SS18-214ENST00000580003 HDAC5Q9UQL6 1122 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 MYRFQ9Y2G1 1151 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 PCDHGA2Q9Y5H1 932 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 MRFAP1Q9Y605 127 aa8.54□□□□□ -1.04
SS18-214ENST00000580003 SHTN1A0MZ66 631 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 ACRV1P26436 265 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 ECHS1P30084 290 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 CRHR1P34998 444 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 KRTAP10-2P60368 255 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 APBA1Q02410 837 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 ACAP2Q15057 778 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 ZXDCQ2QGD7 858 aaPredicted RBP8.53□□□□□ -1.04
SS18-214ENST00000580003 DBX2Q6ZNG2 339 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 MB21D1Q8N884 522 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.53□□□□□ -1.04
SS18-214ENST00000580003 ST8SIA2Q92186 375 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 SLC2A13Q96QE2 648 aa8.53□□□□□ -1.04
SS18-214ENST00000580003 AURKAIP1Q9NWT8 199 aaPredicted RBP8.53□□□□□ -1.04
SS18-214ENST00000580003 RBP3P10745 1247 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 GSPT1P15170 499 aaKnown RBP8.52□□□□□ -1.05
SS18-214ENST00000580003 MST1LQ2TV78 715 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 NRN1LQ496H8 165 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 MDGA1Q8NFP4 955 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 CPPED1Q9BRF8 314 aaPredicted RBP8.52□□□□□ -1.05
SS18-214ENST00000580003 DMRT3Q9NQL9 472 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 SCOCQ9UIL1 159 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 DNM3Q9UQ16 869 aa8.52□□□□□ -1.05
SS18-214ENST00000580003 KLHL33A6NCF5 533 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 GABRDO14764 452 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 XPOTO43592 962 aaKnown RBP8.51□□□□□ -1.05
SS18-214ENST00000580003 HSP90B1P14625 803 aaKnown RBP8.51□□□□□ -1.05
SS18-214ENST00000580003 MCAMP43121 646 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 PER3P56645 1201 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 CNGB1Q14028 1251 aaPredicted RBP8.51□□□□□ -1.05
SS18-214ENST00000580003 NOMO1Q15155 1222 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 USP39Q53GS9 565 aaKnown RBP8.51□□□□□ -1.05
SS18-214ENST00000580003 SPRED1Q7Z699 444 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 FAM83AQ86UY5 434 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 MDM1Q8TC05 714 aa8.51□□□□□ -1.05
SS18-214ENST00000580003 ATXN2LQ8WWM7 1075 aaKnown RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms