RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CSPP1Q1MSJ5 1256 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 KCNT2Q6UVM3 1135 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 LRRC55Q6ZSA7 311 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 EP400NLQ6ZTU2 488 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 LMAN2LQ9H0V9 348 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 FZD8Q9H461 694 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 BLOC1S4Q9NUP1 217 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 THEGQ9P2T0 379 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 PARP2Q9UGN5 583 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 PLAGL2Q9UPG8 496 aa21.47■■□□□ 1.03
SS18-209ENST00000578595 ACKR2O00590 384 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 FGF18O76093 207 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 POMCP01189 267 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 CA8P35219 290 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 PPM1AP35813 382 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 MLH1P40692 756 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 NAALADL2Q58DX5 795 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 AGMOQ6ZNB7 445 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 CCDC73Q6ZRK6 1079 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 PDILTQ8N807 584 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 SMG8Q8ND04 991 aaKnown RBP21.46■■□□□ 1.03
SS18-209ENST00000578595 MICAL1Q8TDZ2 1067 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 LRRC15Q8TF66 581 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 REEP2Q9BRK0 252 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 PANK2Q9BZ23 570 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 CCDC113Q9H0I3 377 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 PDZD7Q9H5P4 517 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 C17orf75Q9HAS0 396 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 TBC1D13Q9NVG8 400 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 LARSQ9P2J5 1176 aaKnown RBP21.46■■□□□ 1.03
SS18-209ENST00000578595 STK17AQ9UEE5 414 aa21.46■■□□□ 1.03
SS18-209ENST00000578595 TCF20Q9UGU0 1960 aaKnown RBP21.45■■□□□ 1.02
SS18-209ENST00000578595 A0A1B0GUA9 196 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 TTLL13PA6NNM8 815 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 OFD1O75665 1012 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 PLS3P13797 630 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 AKAP5P24588 427 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 ME1P48163 572 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 ALDH7A1P49419 539 aaKnown RBP21.45■■□□□ 1.02
SS18-209ENST00000578595 DNM1Q05193 864 aaKnown RBP21.45■■□□□ 1.02
SS18-209ENST00000578595 STRN3Q13033 797 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 FAM187BQ17R55 369 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 ATF7IP2Q5U623 682 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 APBB1IPQ7Z5R6 666 aaPredicted RBP21.45■■□□□ 1.02
SS18-209ENST00000578595 MRPL10Q7Z7H8 261 aaKnown RBP21.45■■□□□ 1.02
SS18-209ENST00000578595 POF1BQ8WVV4 589 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 RSPH1Q8WYR4 309 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 RPS6KC1Q96S38 1066 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 NSUN3Q9H649 340 aaKnown RBP21.45■■□□□ 1.02
SS18-209ENST00000578595 UBN1Q9NPG3 1134 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 CFAP45Q9UL16 551 aa21.45■■□□□ 1.02
SS18-209ENST00000578595 EYSQ5T1H1 3165 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 NT5C1B-RDH14C9J2C7 533 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 PPP6R2O75170 966 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 EDN1P05305 212 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 BCAR1P56945 870 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 ARSHQ5FYA8 562 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 MYCT1Q8N699 235 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 KCNG4Q8TDN1 519 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 GAD1Q99259 594 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 MRPL4Q9BYD3 311 aaKnown RBP21.44■■□□□ 1.02
SS18-209ENST00000578595 RNF39Q9H2S5 420 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 KLK14Q9P0G3 267 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 ODF2LQ9ULJ1 636 aa21.44■■□□□ 1.02
SS18-209ENST00000578595 RBM19Q9Y4C8 960 aaKnown RBP21.44■■□□□ 1.02
SS18-209ENST00000578595 K7ENM7 598 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 CUTAO60888 179 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 HARSP12081 509 aaKnown RBP21.43■■□□□ 1.02
SS18-209ENST00000578595 DDIT3P35638 169 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 MATR3P43243 847 aaKnown RBP eCLIP21.43■■□□□ 1.02
SS18-209ENST00000578595 KRT17Q04695 432 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 TCEAL5Q5H9L2 206 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 EEF1DP3Q658K8 133 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 SV2BQ7L1I2 683 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 DYMQ7RTS9 669 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 SPPL3Q8TCT6 385 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 PPP2R3CQ969Q6 453 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 BICD1Q96G01 975 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 TMEM169Q96HH4 297 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 ZFP42Q96MM3 310 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 ENTPD7Q9NQZ7 604 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 TLR9Q9NR96 1032 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 SPG21Q9NZD8 308 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 ARHGAP28Q9P2N2 729 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 KANSL3Q9P2N6 904 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 PUF60Q9UHX1 559 aaKnown RBP21.43■■□□□ 1.02
SS18-209ENST00000578595 KCNG1Q9UIX4 513 aa21.43■■□□□ 1.02
SS18-209ENST00000578595 MORC2Q9Y6X9 1032 aaPredicted RBP21.43■■□□□ 1.02
SS18-209ENST00000578595 H0YCG3 227 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 BRD1O95696 1058 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 SCNN1GP51170 649 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 DCAF4L1Q3SXM0 396 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 ZNF568Q3ZCX4 644 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 ATL3Q6DD88 541 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 ZBTB33Q86T24 672 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 TCHPQ9BT92 498 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 IGFLR1Q9H665 355 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 TMEM134Q9H6X4 195 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 NRDE2Q9H7Z3 1164 aa21.42■■□□□ 1.02
SS18-209ENST00000578595 PARVGQ9HBI0 331 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms