RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 MEIS3P2A8K0S8 358 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 PIK3CDO00329 1044 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 HAND2P61296 217 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 SCAPQ12770 1279 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 TBC1D10CQ8IV04 446 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 GPR65Q8IYL9 337 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 MIER1Q8N108 512 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 ENAHQ8N8S7 591 aaPredicted RBP18.46■□□□□ 0.55
VPS53-218ENST00000575207 SMARCC2Q8TAQ2 1214 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 PIK3R5Q8WYR1 880 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 RNF41Q9H4P4 317 aaPredicted RBP18.46■□□□□ 0.55
VPS53-218ENST00000575207 RIOX1Q9H6W3 641 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 JADE2Q9NQC1 790 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 CHST7Q9NS84 486 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 MARCH5Q9NX47 278 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 FNIP2Q9P278 1114 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 KCNH3Q9ULD8 1083 aa18.46■□□□□ 0.55
VPS53-218ENST00000575207 CCDC163A0A0D9SF12 145 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 MEIS2O14770 477 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 ZNF623O75123 536 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 SKIP12755 728 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 DARSP14868 501 aaKnown RBP18.45■□□□□ 0.54
VPS53-218ENST00000575207 HOXC13P31276 330 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 USP17L6PQ6QN14 398 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 ZNF605Q86T29 641 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 METTL13Q8N6R0 699 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 DEFB124Q8NES8 71 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 ELSPBP1Q96BH3 223 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.45■□□□□ 0.54
VPS53-218ENST00000575207 C2orf42Q9NWW7 574 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 MAD2L2Q9UI95 211 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 NEDD4P46934 1319 aa18.45■□□□□ 0.54
VPS53-218ENST00000575207 URB1O60287 2271 aaKnown RBP18.44■□□□□ 0.54
VPS53-218ENST00000575207 BAZ2BQ9UIF8 2168 aaKnown RBP18.44■□□□□ 0.54
VPS53-218ENST00000575207 PNMA6FA0A0J9YX94 578 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 PALM3A6NDB9 673 aaPredicted RBP18.44■□□□□ 0.54
VPS53-218ENST00000575207 H0Y626 953 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 CDX4O14627 284 aaPredicted RBP18.44■□□□□ 0.54
VPS53-218ENST00000575207 AKAP3O75969 853 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 TRIM16O95361 564 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 HOXA9P31269 272 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 LONRF3Q496Y0 759 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 UBL7Q96S82 380 aaPredicted RBP18.44■□□□□ 0.54
VPS53-218ENST00000575207 ZSCAN10Q96SZ4 725 aaPredicted RBP18.44■□□□□ 0.54
VPS53-218ENST00000575207 BRD9Q9H8M2 597 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 TMEM9BQ9NQ34 198 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 PIAS3Q9Y6X2 628 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 NFASCO94856 1347 aa18.44■□□□□ 0.54
VPS53-218ENST00000575207 POU2F2P09086 479 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 FGFR4P22455 802 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 LRRC32Q14392 662 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 TANGO2Q6ICL3 276 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 MAP4K3Q8IVH8 894 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 LINC01465Q8N7H1 131 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 IRF7Q92985 503 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 GDE1Q9NZC3 331 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 FBXW11Q9UKB1 542 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 NOTCH4Q99466 2003 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 COL4A2P08572 1712 aa18.43■□□□□ 0.54
VPS53-218ENST00000575207 CLCN3P51790 818 aa18.42■□□□□ 0.54
VPS53-218ENST00000575207 MLLT6P55198 1093 aaPredicted RBP18.42■□□□□ 0.54
VPS53-218ENST00000575207 URGCPQ8TCY9 931 aa18.42■□□□□ 0.54
VPS53-218ENST00000575207 SLC39A7Q92504 469 aa18.42■□□□□ 0.54
VPS53-218ENST00000575207 CUL5Q93034 780 aa18.42■□□□□ 0.54
VPS53-218ENST00000575207 FAM193BQ96PV7 902 aaPredicted RBP18.42■□□□□ 0.54
VPS53-218ENST00000575207 KANSL3Q9P2N6 904 aa18.42■□□□□ 0.54
VPS53-218ENST00000575207 AKT3Q9Y243 479 aa18.42■□□□□ 0.54
VPS53-218ENST00000575207 WDR81Q562E7 1941 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 ARHGAP6O43182 974 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 XYLBO75191 536 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 CCDC192P0DO97 292 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 ATP4AP20648 1035 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 AFF1P51825 1210 aaKnown RBP18.41■□□□□ 0.54
VPS53-218ENST00000575207 PLK5Q496M5 336 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 Q6ZS52 159 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 MAP7D2Q96T17 732 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 SDF4Q9BRK5 362 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 TRMT61BQ9BVS5 477 aaKnown RBP18.41■□□□□ 0.54
VPS53-218ENST00000575207 CCDC86Q9H6F5 360 aaKnown RBP18.41■□□□□ 0.54
VPS53-218ENST00000575207 ZNF334Q9HCZ1 680 aaPredicted RBP18.41■□□□□ 0.54
VPS53-218ENST00000575207 KCNH7Q9NS40 1196 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 RBM12Q9NTZ6 932 aaKnown RBP18.41■□□□□ 0.54
VPS53-218ENST00000575207 FAM105AQ9NUU6 356 aa18.41■□□□□ 0.54
VPS53-218ENST00000575207 MAGEB2O15479 319 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 CYTH3O43739 400 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 CAVIN2O95810 425 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 CCNE1P24864 410 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 RAB27AP51159 221 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 GPC3P51654 580 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 PPM1LQ5SGD2 360 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 FAM160B1Q5W0V3 765 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 TWF2Q6IBS0 349 aaKnown RBP18.4■□□□□ 0.54
VPS53-218ENST00000575207 POTEHQ6S545 545 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 ABHD15Q6UXT9 468 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 GLYCTKQ8IVS8 523 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 SLC32A1Q9H598 525 aa18.4■□□□□ 0.54
VPS53-218ENST00000575207 PRG3Q9Y2Y8 225 aaPredicted RBP18.4■□□□□ 0.54
VPS53-218ENST00000575207 BCLAF3A2AJT9 711 aaKnown RBP18.39■□□□□ 0.53
VPS53-218ENST00000575207 J3QKU1 62 aa18.39■□□□□ 0.53
VPS53-218ENST00000575207 BACH1O14867 736 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms