RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 CNTNAP2Q9UHC6 1331 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 EXOC3O60645 756 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 EIF4BP23588 611 aaKnown RBP26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 TRIM71Q2Q1W2 868 aaKnown RBP26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 CCDC40Q4G0X9 1142 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 ZNF710Q8N1W2 664 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 SAAL1Q96ER3 474 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 TMEM106CQ9BVX2 250 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 SEZ6LQ9BYH1 1024 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 TRIM5Q9C035 493 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 HAPLN2Q9GZV7 340 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 TAB2Q9NYJ8 693 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 IFNKQ9P0W0 207 aa26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 LIMA1Q9UHB6 759 aaKnown RBP26.28■■□□□ 1.8
ATPAF1-213ENST00000574428 TSPAN1O60635 241 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 ERLIN2O94905 339 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 CHRNA1P02708 482 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 RPLP2P05387 115 aaKnown RBP26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 MATR3P43243 847 aaKnown RBP eCLIP26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 MYBPC2Q14324 1141 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 ATF7IP2Q5U623 682 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 APTXQ7Z2E3 356 aaKnown RBP26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 CDR2LQ86X02 465 aaPredicted RBP26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 FAM126BQ8IXS8 530 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 XXYLT1Q8NBI6 393 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 TMEM174Q8WUU8 243 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 CPB2Q96IY4 423 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 PRIMPOLQ96LW4 560 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 STYXL1Q9Y6J8 313 aa26.27■■□□□ 1.8
ATPAF1-213ENST00000574428 GOLGA8IPA6NC78 632 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 GOLGA8JA6NMD2 632 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 SLC16A3O15427 465 aaKnown RBP26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 TOM1L1O75674 476 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 GNA14O95837 355 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 COL6A1P12109 1028 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 GARTP22102 1010 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 MTIF2P46199 727 aaKnown RBP26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 MGAT3Q09327 533 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 TSHZ1Q6ZSZ6 1077 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 ANKLE1Q8NAG6 615 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 RDH13Q8NBN7 331 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 ANKRD20A12PQ8NF67 263 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 NAP1L5Q96NT1 182 aaPredicted RBP26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 FRMD4BQ9Y2L6 1034 aa26.26■■□□□ 1.79
ATPAF1-213ENST00000574428 PQBP1O60828 265 aaKnown RBP26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 EPB41P11171 864 aaKnown RBP26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 HARSP12081 509 aaKnown RBP26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 SLFN12LQ6IEE8 588 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 SLC39A5Q6ZMH5 540 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 CATSPER4Q7RTX7 472 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 ZBTB33Q86T24 672 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 FAM186BQ8IYM0 893 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 PDLIM2Q96JY6 352 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 TCHPQ9BT92 498 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 ADCY5O95622 1261 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 ARF4P18085 180 aaPredicted RBP26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 PSMC2P35998 433 aaKnown RBP26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 EEF1DP3Q658K8 133 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 TUBGCP2Q9BSJ2 902 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 MSTO1Q9BUK6 570 aa26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 XPO4Q9C0E2 1151 aaKnown RBP26.25■■□□□ 1.79
ATPAF1-213ENST00000574428 A0A0B4J269 797 aa26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 CLDN3O15551 220 aa26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 SFPQP23246 707 aaKnown RBP eCLIP26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 COPB1P53618 953 aaKnown RBP26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 UBASH3AP57075 661 aa26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 VPS16Q9H269 839 aa26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 AGO2Q9UKV8 859 aaKnown RBP26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 TNFSF13BQ9Y275 285 aa26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 NOC2LQ9Y3T9 749 aaKnown RBP26.24■■□□□ 1.79
ATPAF1-213ENST00000574428 ABLIM1O14639 778 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 PRKCSHP14314 528 aaPredicted RBP26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 PROZP22891 400 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 ZNF75DP51815 510 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 MARSP56192 900 aaKnown RBP26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 ZNF568Q3ZCX4 644 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 MPZL3Q6UWV2 235 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 CBWD2Q8IUF1 395 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 PAWRQ96IZ0 340 aaKnown RBP26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 FAM213AQ9BRX8 229 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 MKNK1Q9BUB5 465 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 PDZD7Q9H5P4 517 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 PTPRHQ9HD43 1115 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 ARMCX3Q9UH62 379 aaPredicted RBP26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 CD4P01730 458 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 CKBP12277 381 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 ZNF618Q5T7W0 954 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 FRMD5Q7Z6J6 570 aa26.23■■□□□ 1.79
ATPAF1-213ENST00000574428 LRRC10BA6NIK2 292 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 MCL1Q07820 350 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 NOLC1Q14978 699 aaKnown RBP eCLIP26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 SNRNP35Q16560 246 aaKnown RBP26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 ZBTB41Q5SVQ8 909 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 FAM228AQ86W67 206 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 GPD1LQ8N335 351 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 BORCS6Q96GS4 357 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 OSBPL7Q9BZF2 842 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 C11orf49Q9H6J7 331 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 INTS13Q9NVM9 706 aa26.22■■□□□ 1.79
ATPAF1-213ENST00000574428 MROH7Q68CQ1 1323 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms