RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SOD2P04179 222 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 POU5F1BQ06416 359 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 MXD4Q14582 209 aaPredicted RBP23.48■■□□□ 1.35
VPS53-216ENST00000574029 IFNLR1Q8IU57 520 aaPredicted RBP23.48■■□□□ 1.35
VPS53-216ENST00000574029 TPH2Q8IWU9 490 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 COLGALT2Q8IYK4 626 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 WASF1Q92558 559 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 TNFRSF25Q93038 417 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 CCDC51Q96ER9 411 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 EIF2AQ9BY44 585 aaKnown RBP23.48■■□□□ 1.35
VPS53-216ENST00000574029 FAM86C1Q9NVL1 165 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 ORC3Q9UBD5 711 aaPredicted RBP23.48■■□□□ 1.35
VPS53-216ENST00000574029 TDRD15B5MCY1 1934 aaKnown RBP23.47■■□□□ 1.35
VPS53-216ENST00000574029 GALR2O43603 387 aaPredicted RBP23.47■■□□□ 1.35
VPS53-216ENST00000574029 LYPLA2O95372 231 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 EFEMP2O95967 443 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 NR5A1Q13285 461 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 NOTUMQ6P988 496 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 RNF168Q8IYW5 571 aaPredicted RBP23.47■■□□□ 1.35
VPS53-216ENST00000574029 ATOH1Q92858 354 aaPredicted RBP23.47■■□□□ 1.35
VPS53-216ENST00000574029 EIF2AK1Q9BQI3 630 aaKnown RBP23.47■■□□□ 1.35
VPS53-216ENST00000574029 HERC2P3Q9BVR0 1158 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 RNF39Q9H2S5 420 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 SSX2IPQ9Y2D8 614 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 PLXNA3P51805 1871 aa23.47■■□□□ 1.35
VPS53-216ENST00000574029 ARL5CA6NH57 179 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 FDPSP14324 419 aaKnown RBP23.46■■□□□ 1.35
VPS53-216ENST00000574029 KRT2P35908 639 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 DSC1Q08554 894 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 TFDP1Q14186 410 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 C15orf39Q6ZRI6 1047 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 CCDC149Q6ZUS6 474 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 OTOP3Q7RTS5 596 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 TMEM105Q8N8V8 129 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 ACSF2Q96CM8 615 aaPredicted RBP23.46■■□□□ 1.35
VPS53-216ENST00000574029 CPB2Q96IY4 423 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 RPS6KC1Q96S38 1066 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 GAD1Q99259 594 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 HSD17B14Q9BPX1 270 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 CSRNP2Q9H175 543 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 ANKEF1Q9NU02 776 aa23.46■■□□□ 1.35
VPS53-216ENST00000574029 PRG3Q9Y2Y8 225 aaPredicted RBP23.46■■□□□ 1.35
VPS53-216ENST00000574029 SPDYE4A6NLX3 237 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 H0Y858 1186 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 ST18O60284 1047 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 URODP06132 367 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 MLH1P40692 756 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 OR1G1P47890 313 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 MBTD1Q05BQ5 628 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 NCBP1Q09161 790 aaKnown RBP23.45■■□□□ 1.34
VPS53-216ENST00000574029 ANKRD1Q15327 319 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 AMHR2Q16671 573 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 TAS1R1Q7RTX1 841 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 CMASQ8NFW8 434 aaPredicted RBP23.45■■□□□ 1.34
VPS53-216ENST00000574029 MIOSQ9NXC5 875 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 PCDHA12Q9UN75 941 aa23.45■■□□□ 1.34
VPS53-216ENST00000574029 INO80B-WBP1J3KQ70 363 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 C2CD2LO14523 706 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 DGAT1O75907 488 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 ARL2P36404 184 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 AK2P54819 239 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 ANAPC15P60006 121 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 CAPSQ13938 189 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 KIAA0319Q5VV43 1072 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 ASTLQ6HA08 431 aaPredicted RBP23.44■■□□□ 1.34
VPS53-216ENST00000574029 ASAP3Q8TDY4 903 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 NFKBIZQ9BYH8 718 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 RXFP1Q9HBX9 757 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 BRMS1Q9HCU9 246 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 HES2Q9Y543 173 aa23.44■■□□□ 1.34
VPS53-216ENST00000574029 ADH1AP07327 375 aa23.43■■□□□ 1.34
VPS53-216ENST00000574029 ARF4P18085 180 aaPredicted RBP23.43■■□□□ 1.34
VPS53-216ENST00000574029 CALCRLQ16602 461 aa23.43■■□□□ 1.34
VPS53-216ENST00000574029 ZFP42Q96MM3 310 aa23.43■■□□□ 1.34
VPS53-216ENST00000574029 RHOBTB2Q9BYZ6 727 aa23.43■■□□□ 1.34
VPS53-216ENST00000574029 MAN1C1Q9NR34 630 aa23.43■■□□□ 1.34
VPS53-216ENST00000574029 GIT1Q9Y2X7 761 aa23.43■■□□□ 1.34
VPS53-216ENST00000574029 TEX28O15482 410 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 GFRA3O60609 400 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 GLRA2P23416 452 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 GLUD2P49448 558 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 SCNN1GP51170 649 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 CLCN5P51795 746 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 TDGQ13569 410 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 CYP26C1Q6V0L0 522 aa23.42■■□□□ 1.34
VPS53-216ENST00000574029 TTC12Q9H892 705 aaPredicted RBP23.42■■□□□ 1.34
VPS53-216ENST00000574029 PROB1E7EW31 1015 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 NR1I2O75469 434 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 RARRES1P49788 294 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 DSG1Q02413 1049 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 ME3Q16798 604 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 NECAB1Q8N987 351 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 GSTCDQ8NEC7 633 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 MFSD1Q9H3U5 465 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 NXF3Q9H4D5 531 aaKnown RBP23.41■■□□□ 1.34
VPS53-216ENST00000574029 KCNK12Q9HB15 430 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 CHST7Q9NS84 486 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 DPP7Q9UHL4 492 aa23.41■■□□□ 1.34
VPS53-216ENST00000574029 MTCL1Q9Y4B5 1905 aaKnown RBP23.4■■□□□ 1.34
VPS53-216ENST00000574029 CCDC195A0A1B0GUA6 201 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms