RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PPP1R18Q6NYC8 613 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 TAS1R1Q7RTX1 841 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.45□□□□□ -0.42
VPS53-207ENST00000570510 GRASPQ7Z6J2 395 aaPredicted RBP12.45□□□□□ -0.42
VPS53-207ENST00000570510 RAB11FIP4Q86YS3 637 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 FANCBQ8NB91 859 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 NLRP4Q96MN2 994 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 KXD1Q9BQD3 176 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 PHF20Q9BVI0 1012 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 COLEC11Q9BWP8 271 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 UBN1Q9NPG3 1134 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 DISC1Q9NRI5 854 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 XYLBO75191 536 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 ZMYND10O75800 440 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 C1RP00736 705 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 DSG1Q02413 1049 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 ADCY1Q08828 1119 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 MTAPQ13126 283 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 SIM2Q14190 667 aaPredicted RBP12.44□□□□□ -0.42
VPS53-207ENST00000570510 MTERF2Q49AM1 385 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 PRR16Q569H4 304 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 PPM1LQ5SGD2 360 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 JAKMIP3Q5VZ66 844 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 PRR23CQ6ZRP0 262 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 TMTC3Q6ZXV5 915 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 ZNF410Q86VK4 478 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 MICU3Q86XE3 530 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 FGF13Q92913 245 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 CLDN23Q96B33 292 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 TMEM87BQ96K49 555 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 RXFP1Q9HBX9 757 aa12.44□□□□□ -0.42
VPS53-207ENST00000570510 SUCLA2Q9P2R7 463 aaPredicted RBP12.44□□□□□ -0.42
VPS53-207ENST00000570510 SEPT9Q9UHD8 586 aaPredicted RBP12.44□□□□□ -0.42
VPS53-207ENST00000570510 USP24Q9UPU5 2620 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 CHMP2AO43633 222 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 B4GALT3O60512 393 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 ITGA4P13612 1032 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 TARSP26639 723 aaKnown RBP12.43□□□□□ -0.42
VPS53-207ENST00000570510 CSRP2Q16527 193 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 USP41Q3LFD5 358 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 AASDHQ4L235 1098 aaPredicted RBP12.43□□□□□ -0.42
VPS53-207ENST00000570510 AGMOQ6ZNB7 445 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 CENPQQ7L2Z9 268 aaPredicted RBP12.43□□□□□ -0.42
VPS53-207ENST00000570510 MB21D2Q8IYB1 491 aaPredicted RBP12.43□□□□□ -0.42
VPS53-207ENST00000570510 NELL1Q92832 810 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 MTA3Q9BTC8 594 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 PRMT8Q9NR22 394 aaPredicted RBP12.43□□□□□ -0.42
VPS53-207ENST00000570510 NDRG2Q9UN36 371 aaKnown RBP12.43□□□□□ -0.42
VPS53-207ENST00000570510 MIA3Q5JRA6 1907 aa12.43□□□□□ -0.42
VPS53-207ENST00000570510 hCG_1984214I3L0E3 225 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 NTHL1P78549 312 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 PTH1RQ03431 593 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 DRP2Q13474 957 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 N4BP2L1Q5TBK1 243 aaPredicted RBP12.42□□□□□ -0.42
VPS53-207ENST00000570510 ZNF713Q8N859 430 aaPredicted RBP12.42□□□□□ -0.42
VPS53-207ENST00000570510 C12orf50Q8NA57 414 aaPredicted RBP12.42□□□□□ -0.42
VPS53-207ENST00000570510 CNNM3Q8NE01 707 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 B3GALT6Q96L58 329 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 JPH2Q9BR39 696 aaPredicted RBP12.42□□□□□ -0.42
VPS53-207ENST00000570510 IL25Q9H293 177 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 HEBP1Q9NRV9 189 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 FNIP2Q9P278 1114 aa12.42□□□□□ -0.42
VPS53-207ENST00000570510 V9GY48 417 aaPredicted RBP12.42□□□□□ -0.42
VPS53-207ENST00000570510 IGLV3-22A0A075B6J6 115 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 MAN2B1O00754 1011 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 SH2B2O14492 632 aaPredicted RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 CCL16O15467 120 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 ZNF862O60290 1169 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 GDF9O60383 454 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 GAS7O60861 476 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 PROS1P07225 676 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 CYP3A4P08684 503 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 HNRNPA1P09651 372 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS53-207ENST00000570510 RPL17P18621 184 aaKnown RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 SFNP31947 248 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 LIFRP42702 1097 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 CCR3P51677 355 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 AFF1P51825 1210 aaKnown RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 JAK3P52333 1124 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 NCBP1Q09161 790 aaKnown RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 CEP68Q76N32 757 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 MRPL10Q7Z7H8 261 aaKnown RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 COLGALT2Q8IYK4 626 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 AGPAT5Q9NUQ2 364 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 RBM28Q9NW13 759 aaKnown RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 MARCH5Q9NX47 278 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 TAF6LQ9Y6J9 622 aa12.41□□□□□ -0.42
VPS53-207ENST00000570510 MYH9P35579 1960 aaKnown RBP12.41□□□□□ -0.42
VPS53-207ENST00000570510 FAM208BQ5VWN6 2430 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 ARL5CA6NH57 179 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 DDX11L8A8MPP1 907 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 TADA2AO75478 443 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 ERLIN2O94905 339 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 CENPBP07199 599 aaPredicted RBP12.4□□□□□ -0.42
VPS53-207ENST00000570510 PMLP29590 882 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 SHC2P98077 582 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 XKR3Q5GH77 459 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 TYW1BQ6NUM6 668 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 FUT10Q6P4F1 479 aa12.4□□□□□ -0.42
VPS53-207ENST00000570510 KSR1Q8IVT5 923 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms