RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 MYCP01106 439 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 HIBADHP31937 336 aaKnown RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 KRT9P35527 623 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 PPP1R2P41236 205 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 DCTN2Q13561 401 aaKnown RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 TMEM259Q4ZIN3 620 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 PPP1R2P3Q6NXS1 205 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 CD302Q8IX05 232 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 CCDC110Q8TBZ0 833 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 UBLCP1Q8WVY7 318 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 CHP1Q99653 195 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 HAUS4Q9H6D7 363 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 CABP5Q9NP86 173 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ZMAT5Q9UDW3 170 aaKnown RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 MAN1B1Q9UKM7 699 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ATP6V0A2Q9Y487 856 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 BRWD3Q6RI45 1802 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ENTPD5O75356 428 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 USP17L8P0C7I0 530 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 NAA20P61599 178 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 TUBA1BP68363 451 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 WASHC5Q12768 1159 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 MORC3Q14149 939 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 KRT71Q3SY84 523 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 RILPL1Q5EBL4 403 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 WDR45BQ5MNZ6 344 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 TMTC4Q5T4D3 741 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 PPP2R2DQ66LE6 453 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 TUBA1AQ71U36 451 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 OSTM1Q86WC4 334 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 EPSTI1Q96J88 318 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 STOML1Q9UBI4 398 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 GPC6Q9Y625 555 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 V9GY48 417 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 SNED1Q8TER0 1413 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ADAMTSL1Q8N6G6 1762 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 S100BP04271 92 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 GLI1P08151 1106 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 VHLP40337 213 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 PAFAH1B1P43034 410 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 PPIDQ08752 370 aaKnown RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 RALGDSQ12967 914 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 NR1I3Q14994 352 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ZCWPW2Q504Y3 356 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 SNX30Q5VWJ9 437 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 KLHL35Q6PF15 583 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 TAOK1Q7L7X3 1001 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ZNF804AQ7Z570 1209 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 C4orf32Q8N8J7 132 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 ZNF280CQ8ND82 737 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 STK33Q9BYT3 514 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 RPAP3Q9H6T3 665 aaPredicted RBP11.59□□□□□ -0.55
CLK3-226ENST00000569406 TTLL3Q9Y4R7 772 aa11.59□□□□□ -0.55
CLK3-226ENST00000569406 BIRC5O15392 142 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 LYNP07948 512 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 CRY1Q16526 586 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 CRY2Q49AN0 593 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 PDCD4Q53EL6 469 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 RSPH3Q86UC2 560 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 ANKRD13BQ86YJ7 626 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 GRAMD2AQ8IUY3 354 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 NSMCE3Q96MG7 304 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 OLFM3Q96PB7 478 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 UBAC1Q9BSL1 405 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 DHX36Q9H2U1 1008 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 SERTAD1Q9UHV2 236 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 CCNL1Q9UK58 526 aaPredicted RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 MTRF1O75570 445 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 ALDH2P05091 517 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 VWA3BQ502W6 1294 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 IFNLR1Q8IU57 520 aaPredicted RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 NGLY1Q96IV0 654 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 FAM129AQ9BZQ8 928 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 NYXQ9GZU5 481 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 NSRP1Q9H0G5 558 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 FAM205AQ6ZU69 1335 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 NOTOA8MTQ0 251 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 CYTH3O43739 400 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 KRT86O43790 486 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 DKC1O60832 514 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLK3-226ENST00000569406 NDUFA10O95299 355 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 PCP11498 1178 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 CD44P16070 742 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 CASP1P29466 404 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 EIF2B2P49770 351 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 RELAQ04206 551 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 TNIP1Q15025 636 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 PCSK7Q16549 785 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 CMPK2Q5EBM0 449 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 PATL1Q86TB9 770 aaKnown RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 FAM20CQ8IXL6 584 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 WASF1Q92558 559 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 SKA1Q96BD8 255 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 EEF2KMTQ96G04 330 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 SPZ1Q9BXG8 430 aa11.58□□□□□ -0.56
CLK3-226ENST00000569406 KIAA1522Q9P206 1035 aaPredicted RBP11.58□□□□□ -0.56
CLK3-226ENST00000569406 MYH1P12882 1939 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 WDR46O15213 610 aaKnown RBP11.57□□□□□ -0.56
CLK3-226ENST00000569406 ZPR1O75312 459 aa11.57□□□□□ -0.56
CLK3-226ENST00000569406 WFS1O76024 890 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms