RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 MARCH5Q9NX47 278 aa12.76□□□□□ -0.37
CDH3-208ENST00000569036 AKT3Q9Y243 479 aa12.76□□□□□ -0.37
CDH3-208ENST00000569036 FAN1Q9Y2M0 1017 aa12.76□□□□□ -0.37
CDH3-208ENST00000569036 PCDHGA5Q9Y5G8 931 aa12.76□□□□□ -0.37
CDH3-208ENST00000569036 ACACAQ13085 2346 aa12.76□□□□□ -0.37
CDH3-208ENST00000569036 MAFGO15525 162 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 NFASCO94856 1347 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 EFEMP2O95967 443 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 CHRNB1P11230 501 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 DARSP14868 501 aaKnown RBP12.75□□□□□ -0.37
CDH3-208ENST00000569036 CSRP1P21291 193 aaKnown RBP12.75□□□□□ -0.37
CDH3-208ENST00000569036 MYH9P35579 1960 aaKnown RBP12.75□□□□□ -0.37
CDH3-208ENST00000569036 DSG1Q02413 1049 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 DAB2IPQ5VWQ8 1189 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 TTC41PQ6P2S7 1318 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 KBTBD6Q86V97 674 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 GLYCTKQ8IVS8 523 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 FAM3CQ92520 227 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 TMEM175Q9BSA9 504 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 TRAIPQ9BWF2 469 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 ASXL3Q9C0F0 2248 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 HELLSQ9NRZ9 838 aa12.75□□□□□ -0.37
CDH3-208ENST00000569036 EML5Q05BV3 1969 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 B4E1Z4 1266 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 BACH1O14867 736 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 ALDH2P05091 517 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 ATP4AP20648 1035 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 NT5C2P49902 561 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 C19orf57Q0VDD7 668 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 FAM160B1Q5W0V3 765 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 CACNA2D4Q7Z3S7 1137 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 CCDC60Q8IWA6 550 aaPredicted RBP12.74□□□□□ -0.37
CDH3-208ENST00000569036 LINC01465Q8N7H1 131 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 URGCPQ8TCY9 931 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 MAP7D2Q96T17 732 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 SDF4Q9BRK5 362 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 KCNH7Q9NS40 1196 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 C2orf42Q9NWW7 574 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 PRG3Q9Y2Y8 225 aaPredicted RBP12.74□□□□□ -0.37
CDH3-208ENST00000569036 ZNF462Q96JM2 2506 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 APC2O95996 2303 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 CACNA1EQ15878 2313 aa12.74□□□□□ -0.37
CDH3-208ENST00000569036 PDCD11Q14690 1871 aaKnown RBP12.74□□□□□ -0.37
CDH3-208ENST00000569036 A0A0D9SFI3 127 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 CSDE1O75534 798 aaKnown RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 CCNE2O96020 404 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 PRB1P04280 392 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 HOXA6P31267 233 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 GPC3P51654 580 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 AFF1P51825 1210 aaKnown RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 PTGDRQ13258 359 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 ITGB3BPQ13352 177 aaPredicted RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 IFIT1BQ5T764 474 aaKnown RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 TWF2Q6IBS0 349 aaKnown RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 PDXDC2PQ6P474 469 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 ZNF589Q86UQ0 364 aaPredicted RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 LRRC71Q8N4P6 559 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 GAB3Q8WWW8 586 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 ING5Q8WYH8 240 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 B3GALT6Q96L58 329 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 FAM227BQ96M60 508 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 MBOAT7Q96N66 472 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 FAM193BQ96PV7 902 aaPredicted RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 CHST12Q9NRB3 414 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 FAM105AQ9NUU6 356 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 ZSWIM5Q9P217 1185 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 FBXW11Q9UKB1 542 aa12.73□□□□□ -0.37
CDH3-208ENST00000569036 ASCC3Q8N3C0 2202 aaKnown RBP12.73□□□□□ -0.37
CDH3-208ENST00000569036 CCL16O15467 120 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 RPP40O75818 363 aaKnown RBP12.72□□□□□ -0.37
CDH3-208ENST00000569036 SEC24BO95487 1268 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 HNRNPA1P09651 372 aaKnown RBP eCLIP12.72□□□□□ -0.37
CDH3-208ENST00000569036 SKIP12755 728 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 PLA2G2AP14555 144 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 RPL17P18621 184 aaKnown RBP12.72□□□□□ -0.37
CDH3-208ENST00000569036 GRM2Q14416 872 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 GRM4Q14833 912 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 LARP1BQ659C4 914 aaKnown RBP12.72□□□□□ -0.37
CDH3-208ENST00000569036 TANGO2Q6ICL3 276 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 ABHD15Q6UXT9 468 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 Q6ZS52 159 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 ZNF710Q8N1W2 664 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 DEFB124Q8NES8 71 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 PIBF1Q8WXW3 757 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 SCLT1Q96NL6 688 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 BRD9Q9H8M2 597 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 ZNF302Q9NR11 478 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.72□□□□□ -0.37
CDH3-208ENST00000569036 CHST7Q9NS84 486 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 RBM12Q9NTZ6 932 aaKnown RBP12.72□□□□□ -0.37
CDH3-208ENST00000569036 FNIP2Q9P278 1114 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 PIAS3Q9Y6X2 628 aa12.72□□□□□ -0.37
CDH3-208ENST00000569036 PCNX2A6NKB5 2137 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 LNP1A1A4G5 178 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 F8W810 466 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 ZNF623O75123 536 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 RAB27AP51159 221 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 MCMDC2Q4G0Z9 681 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 PPM1LQ5SGD2 360 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 EFCAB12Q6NXP0 572 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms