RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TPH2Q8IWU9 490 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 EIF2AK1Q9BQI3 630 aaKnown RBP16.63■□□□□ 0.25
CLN3-236ENST00000568558 EMILIN2Q9BXX0 1053 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 EIF2AQ9BY44 585 aaKnown RBP16.63■□□□□ 0.25
CLN3-236ENST00000568558 SMOC2Q9H3U7 446 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 BRMS1Q9HCU9 246 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 UBN1Q9NPG3 1134 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 MARCH5Q9NX47 278 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 IPPQ9Y573 584 aa16.63■□□□□ 0.25
CLN3-236ENST00000568558 INPPL1O15357 1258 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 LYPLA2O95372 231 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 LARGE1O95461 756 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 SOD2P04179 222 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 ASGR2P07307 311 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 CNPP09543 421 aaKnown RBP16.62■□□□□ 0.25
CLN3-236ENST00000568558 ITGA4P13612 1032 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 KLRC2P26717 231 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 NOTUMQ6P988 496 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 GPR149Q86SP6 731 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 PLCD3Q8N3E9 789 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 NECAB1Q8N987 351 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 GTF3C6Q969F1 213 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 CCDC51Q96ER9 411 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 HSD17B14Q9BPX1 270 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 HERC2P3Q9BVR0 1158 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 MRPL17Q9NRX2 175 aaKnown RBP16.62■□□□□ 0.25
CLN3-236ENST00000568558 PCDHA12Q9UN75 941 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 MYO15AQ9UKN7 3530 aa16.62■□□□□ 0.25
CLN3-236ENST00000568558 ARL5CA6NH57 179 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 INO80B-WBP1J3KQ70 363 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 DGAT1O75907 488 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 MBTD1Q05BQ5 628 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 POU5F1BQ06416 359 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 CAPSQ13938 189 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 TFDP1Q14186 410 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 CALCRLQ16602 461 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 AMHR2Q16671 573 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 ME3Q16798 604 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 COLGALT2Q8IYK4 626 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 NSUN7Q8NE18 718 aaKnown RBP16.61■□□□□ 0.25
CLN3-236ENST00000568558 ASAP3Q8TDY4 903 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 CPB2Q96IY4 423 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 GAD1Q99259 594 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 CSRNP2Q9H175 543 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 RNF39Q9H2S5 420 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 TTC12Q9H892 705 aaPredicted RBP16.61■□□□□ 0.25
CLN3-236ENST00000568558 ANKEF1Q9NU02 776 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 LIMD1Q9UGP4 676 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 PRG3Q9Y2Y8 225 aaPredicted RBP16.61■□□□□ 0.25
CLN3-236ENST00000568558 DOCK8Q8NF50 2099 aa16.61■□□□□ 0.25
CLN3-236ENST00000568558 SPDYE4A6NLX3 237 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 WNT7AO00755 349 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 NEMFO60524 1076 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 EFEMP2O95967 443 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 URODP06132 367 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 ARL2P36404 184 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 MLH1P40692 756 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 OR1G1P47890 313 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 NUBP1P53384 320 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 DSC1Q08554 894 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 CCDC149Q6ZUS6 474 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 RNF168Q8IYW5 571 aaPredicted RBP16.6■□□□□ 0.25
CLN3-236ENST00000568558 NFKBIZQ9BYH8 718 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 MIOSQ9NXC5 875 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 HES2Q9Y543 173 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 DMDP11532 3685 aa16.6■□□□□ 0.25
CLN3-236ENST00000568558 BTBD18B2RXH4 712 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 C2CD2LO14523 706 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 ARF4P18085 180 aaPredicted RBP16.59■□□□□ 0.25
CLN3-236ENST00000568558 GLRA2P23416 452 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 TXKP42681 527 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 RARRES1P49788 294 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 SCNN1GP51170 649 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 NCBP1Q09161 790 aaKnown RBP16.59■□□□□ 0.25
CLN3-236ENST00000568558 C15orf39Q6ZRI6 1047 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 TAS1R1Q7RTX1 841 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 DIS3L2Q8IYB7 885 aaKnown RBP16.59■□□□□ 0.25
CLN3-236ENST00000568558 ACSF2Q96CM8 615 aaPredicted RBP16.59■□□□□ 0.25
CLN3-236ENST00000568558 ZFP42Q96MM3 310 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 CCDC43Q96MW1 224 aaKnown RBP16.59■□□□□ 0.25
CLN3-236ENST00000568558 RPS6KC1Q96S38 1066 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 IRF2BPLQ9H1B7 796 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 MAN1C1Q9NR34 630 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 FAM86C1Q9NVL1 165 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 SSX2IPQ9Y2D8 614 aa16.59■□□□□ 0.25
CLN3-236ENST00000568558 ADH1AP07327 375 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 GLUD2P49448 558 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 KIAA0319Q5VV43 1072 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 OTOP3Q7RTS5 596 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 TMEM105Q8N8V8 129 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 CMASQ8NFW8 434 aaPredicted RBP16.58■□□□□ 0.24
CLN3-236ENST00000568558 PIGOQ8TEQ8 1089 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 MTMR9Q96QG7 549 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 APOL6Q9BWW8 343 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 TRIM6Q9C030 488 aaPredicted RBP16.58■□□□□ 0.24
CLN3-236ENST00000568558 NXF3Q9H4D5 531 aaKnown RBP16.58■□□□□ 0.24
CLN3-236ENST00000568558 GIT1Q9Y2X7 761 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 TRIP11Q15643 1979 aa16.58■□□□□ 0.24
CLN3-236ENST00000568558 ZMYM2Q9UBW7 1377 aa16.57■□□□□ 0.24
CLN3-236ENST00000568558 POTEMA6NI47 508 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms