RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	PRMT8	Q9NR22	394 aa	Predicted RBP	13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	SAMM50	Q9Y512	469 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	PCDHB2	Q9Y5E7	798 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	MIA3	Q5JRA6	1907 aa		13.27	□□□□□ -0.29
CLK3-222	ENST00000568232	EFEMP2	O95967	443 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	OAT	P04181	439 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	RPL17	P18621	184 aa	Known RBP	13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	SFPQ	P23246	707 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	PML	P29590	882 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	PRKCE	Q02156	737 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	HDAC1	Q13547	482 aa	Predicted RBP	13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	UGCG	Q16739	394 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	TPRG1	Q6ZUI0	275 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	TMTC3	Q6ZXV5	915 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	RNF168	Q8IYW5	571 aa	Predicted RBP	13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	HDAC7	Q8WUI4	952 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	PGBD4	Q96DM1	585 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	FAM167A	Q96KS9	214 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	KXD1	Q9BQD3	176 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	SH2D3A	Q9BRG2	576 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	PLEKHA4	Q9H4M7	779 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	NRBP2	Q9NSY0	501 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	SEMA4G	Q9NTN9	838 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	ZDHHC7	Q9NXF8	308 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	CDH7	Q9ULB5	785 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	RAB23	Q9ULC3	237 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	SSX2IP	Q9Y2D8	614 aa		13.26	□□□□□ -0.29
CLK3-222	ENST00000568232	TMEM150B	A6NC51	233 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	CCDC69	A6NI79	296 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	SHISA7	A6NL88	538 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	PRC1	O43663	620 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	TDGF1	P13385	188 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	MAGEA9	P43362	315 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	OR1G1	P47890	313 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	RAB27A	P51159	221 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	ADCY7	P51828	1080 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	DSG1	Q02413	1049 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	JAKMIP3	Q5VZ66	844 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	LAIR1	Q6GTX8	287 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	LILRA6	Q6PI73	481 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	PRR23C	Q6ZRP0	262 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	PRR23B	Q6ZRT6	265 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	CATSPER4	Q7RTX7	472 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	KSR1	Q8IVT5	923 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	FGF13	Q92913	245 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	RSAD1	Q9HA92	442 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	TBC1D22B	Q9NU19	505 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	TCEAL9	Q9UHQ7	104 aa		13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	ANKRD11	Q6UB99	2663 aa	Predicted RBP	13.25	□□□□□ -0.29
CLK3-222	ENST00000568232	WDFY3	Q8IZQ1	3526 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	MYH15	Q9Y2K3	1946 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	SMCO2	A6NFE2	343 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	SH2B2	O14492	632 aa	Predicted RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	ADAMTS3	O15072	1205 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	ZMYND10	O75800	440 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	RET	P07949	1114 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	RPS9	P46781	194 aa	Known RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CLK2	P49760	499 aa	Known RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CASC1	Q6TDU7	716 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	MRPL10	Q7Z7H8	261 aa	Known RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CHD1L	Q86WJ1	897 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	RHPN2	Q8IUC4	686 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	COLGALT2	Q8IYK4	626 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CELF5	Q8N6W0	485 aa	Known RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	FANCB	Q8NB91	859 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	ITFG1	Q8TB96	612 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CRYGN	Q8WXF5	182 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	HEBP1	Q9NRV9	189 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CHST7	Q9NS84	486 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	KANSL3	Q9P2N6	904 aa		13.24	□□□□□ -0.29
CLK3-222	ENST00000568232	CEP295	Q9C0D2	2601 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	NCAM2	O15394	837 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	PFKP	Q01813	784 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	AP3B2	Q13367	1082 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	TARBP2	Q15633	366 aa	Known RBP	13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	MTERF2	Q49AM1	385 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	MTSS1L	Q765P7	747 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	CEP89	Q96ST8	783 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	NELL2	Q99435	816 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	PHF20	Q9BVI0	1012 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	GPR62	Q9BZJ7	368 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	PLA2G2F	Q9BZM2	168 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	DISC1	Q9NRI5	854 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	MIOS	Q9NXC5	875 aa		13.23	□□□□□ -0.29
CLK3-222	ENST00000568232	FAM208B	Q5VWN6	2430 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CNTNAP5	Q8WYK1	1306 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CCL16	O15467	120 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	LRP3	O75074	770 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	PROS1	P07225	676 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CYP3A4	P08684	503 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CALM1	P0DP23	149 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CALM2	P0DP24	149 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	CALM3	P0DP25	149 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	SHC2	P98077	582 aa		13.22	□□□□□ -0.29
CLK3-222	ENST00000568232	ADCY1	Q08828	1119 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms