RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SEPT11Q9NVA2 429 aaKnown RBP21.94■■□□□ 1.1
CLN3-230ENST00000568076 TMEM59LQ9UK28 342 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 MAFBQ9Y5Q3 323 aaPredicted RBP21.94■■□□□ 1.1
CLN3-230ENST00000568076 SBF1O95248 1867 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 PPATQ06203 517 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 GPS2Q13227 327 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 KRT39Q6A163 491 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 PEX26Q7Z412 305 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 DAAM2Q86T65 1068 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 RIOX2Q8IUF8 465 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 METTL13Q8N6R0 699 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 VTI1AQ96AJ9 217 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 PBKQ96KB5 322 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 ADARB2Q9NS39 739 aaKnown RBP21.94■■□□□ 1.1
CLN3-230ENST00000568076 COQ4Q9Y3A0 265 aa21.94■■□□□ 1.1
CLN3-230ENST00000568076 TULP1O00294 542 aaPredicted RBP21.93■■□□□ 1.1
CLN3-230ENST00000568076 HNRNPDLO14979 420 aaKnown RBP21.93■■□□□ 1.1
CLN3-230ENST00000568076 BUB1BO60566 1050 aaPredicted RBP21.93■■□□□ 1.1
CLN3-230ENST00000568076 GLI1P08151 1106 aa21.93■■□□□ 1.1
CLN3-230ENST00000568076 CYP24A1Q07973 514 aa21.93■■□□□ 1.1
CLN3-230ENST00000568076 TMC2Q8TDI7 906 aa21.93■■□□□ 1.1
CLN3-230ENST00000568076 CTNNBL1Q8WYA6 563 aaPredicted RBP21.93■■□□□ 1.1
CLN3-230ENST00000568076 TMEM8AQ9HCN3 771 aa21.93■■□□□ 1.1
CLN3-230ENST00000568076 ZNF302Q9NR11 478 aa21.93■■□□□ 1.1
CLN3-230ENST00000568076 SUCLA2Q9P2R7 463 aaPredicted RBP21.93■■□□□ 1.1
CLN3-230ENST00000568076 SGPL1O95470 568 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 TNFRSF8P28908 595 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 FAM193AP78312 1265 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 EMC2Q15006 297 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 BRDTQ58F21 947 aaPredicted RBP21.92■■□□□ 1.1
CLN3-230ENST00000568076 SYCE1Q8N0S2 351 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 HES6Q96HZ4 224 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 KRT12Q99456 494 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 R3HDMLQ9H3Y0 253 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 CSADQ9Y600 493 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 ANKRD62A6NC57 917 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 SOWAHBA6NEL2 793 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 IRF6O14896 467 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 CEP104O60308 925 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 OATP04181 439 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 UBA1P22314 1058 aaKnown RBP21.92■■□□□ 1.1
CLN3-230ENST00000568076 AARSP49588 968 aaKnown RBP eCLIP21.92■■□□□ 1.1
CLN3-230ENST00000568076 ZNF771Q7L3S4 317 aaPredicted RBP21.92■■□□□ 1.1
CLN3-230ENST00000568076 FAM71AQ8IYT1 594 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 RPUSD2Q8IZ73 545 aaKnown RBP21.92■■□□□ 1.1
CLN3-230ENST00000568076 GPD1LQ8N335 351 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 PPM1KQ8N3J5 372 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 ACTRT1Q8TDG2 376 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 HELQQ8TDG4 1101 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 TAS1R2Q8TE23 839 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 TMEM143Q96AN5 459 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 IFT74Q96LB3 600 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 SPATC1LQ9H0A9 340 aa21.92■■□□□ 1.1
CLN3-230ENST00000568076 IGKV6D-21A0A0A0MT36 114 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 CHRNB2P17787 502 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 GARTP22102 1010 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 EDNRBP24530 442 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 POLGP54098 1239 aaPredicted RBP21.91■■□□□ 1.1
CLN3-230ENST00000568076 GADL1Q6ZQY3 521 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 NOP9Q86U38 636 aaKnown RBP21.91■■□□□ 1.1
CLN3-230ENST00000568076 EPS8L1Q8TE68 723 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 CCDC102AQ96A19 550 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 ELMO3Q96BJ8 720 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 DCPSQ96C86 337 aaKnown RBP21.91■■□□□ 1.1
CLN3-230ENST00000568076 CEP89Q96ST8 783 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 PLEKHA4Q9H4M7 779 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 ACP6Q9NPH0 428 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 FBXO40Q9UH90 709 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 NOCTQ9UK39 431 aaKnown RBP21.91■■□□□ 1.1
CLN3-230ENST00000568076 COG5Q9UP83 839 aa21.91■■□□□ 1.1
CLN3-230ENST00000568076 ZSCAN5CA6NGD5 496 aaPredicted RBP21.9■■□□□ 1.1
CLN3-230ENST00000568076 USP8P40818 1118 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 GPC3P51654 580 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 SULF1Q8IWU6 871 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 ASAP3Q8TDY4 903 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 SCFD2Q8WU76 684 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 SHC3Q92529 594 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 PCDHB18PQ96TA0 734 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 PCYT2Q99447 389 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 ISCUQ9H1K1 167 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 ELP3Q9H9T3 547 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 GDF3Q9NR23 364 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 MYH9P35579 1960 aaKnown RBP21.9■■□□□ 1.1
CLN3-230ENST00000568076 GSTTP1A0A1W2PQM5 241 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 HEXIM1O94992 359 aaKnown RBP21.9■■□□□ 1.1
CLN3-230ENST00000568076 SYF2O95926 243 aaKnown RBP21.9■■□□□ 1.1
CLN3-230ENST00000568076 SND1Q7KZF4 910 aaKnown RBP eCLIP21.9■■□□□ 1.11e-7■■■□□ 15.8
CLN3-230ENST00000568076 SV2AQ7L0J3 742 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 FBXL13Q8NEE6 735 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 BICD1Q96G01 975 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 CLMNQ96JQ2 1002 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 FAM84AQ96KN4 292 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 FAM213AQ9BRX8 229 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 ZMYND15Q9H091 742 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 ACBD3Q9H3P7 528 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 DHX33Q9H6R0 707 aaKnown RBP21.9■■□□□ 1.1
CLN3-230ENST00000568076 RAB20Q9NX57 234 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 FAN1Q9Y2M0 1017 aa21.9■■□□□ 1.1
CLN3-230ENST00000568076 A0A0G2JLL6 359 aaPredicted RBP21.89■■□□□ 1.09
CLN3-230ENST00000568076 A0A0U1RQG5 324 aaPredicted RBP21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms