RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 FOXP3Q9BZS1 431 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 GNL3LQ9NVN8 582 aaKnown RBP6.82□□□□□ -1.32
VPS39-209ENST00000568029 CCDC39Q9UFE4 941 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 MTMR6Q9Y217 621 aa6.82□□□□□ -1.32
VPS39-209ENST00000568029 IRS2Q9Y4H2 1338 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 COL1A1P02452 1464 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 COL2A1P02458 1487 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 CLRN2A0PK11 232 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 H3BQV1 296 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 ZNF213O14771 459 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 PLD2O14939 933 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FGF10O15520 208 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 DHX16O60231 1041 aaKnown RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 IDH1O75874 414 aaKnown RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 MED26O95402 600 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 LARGE1O95461 756 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FGAP02671 866 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 IFNGR1P15260 489 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 ADD2P35612 726 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 MCAMP43121 646 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 SEPHS1P49903 392 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 UBE2HP62256 183 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 LACTBP83111 547 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 SCRN1Q12765 414 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 TRDNQ13061 729 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 STK3Q13188 491 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 SF3B3Q15393 1217 aaKnown RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 ALX1Q15699 326 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 DPY19L1Q2PZI1 675 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FNDC3BQ53EP0 1204 aaKnown RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 TRIM61Q5EBN2 209 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FAM209AQ5JX71 171 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 SLC9C2Q5TAH2 1124 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 YOD1Q5VVQ6 348 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 IQCEQ6IPM2 695 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 RALYLQ86SE5 291 aaKnown RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 ANKRD18AQ8IVF6 992 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 KSR1Q8IVT5 923 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FBXL16Q8N461 479 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FAM184AQ8NB25 1140 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 TMEM145Q8NBT3 493 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 KREMEN2Q8NCW0 462 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 NPLOC4Q8TAT6 608 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 GPT2Q8TD30 523 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 U2AF1L4Q8WU68 220 aaKnown RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 GTF3C6Q969F1 213 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 ZNF274Q96GC6 653 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 CCDC120Q96HB5 630 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 FCRL2Q96LA5 508 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 DEFB129Q9H1M3 183 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 ZSCAN16Q9H4T2 348 aaPredicted RBP6.81□□□□□ -1.32
VPS39-209ENST00000568029 NPFFR2Q9Y5X5 522 aa6.81□□□□□ -1.32
VPS39-209ENST00000568029 WDR19Q8NEZ3 1342 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 REV3LO60673 3130 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 CCL15-CCL14A0A0B4J2E2 113 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 XIRP2A4UGR9 3374 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 STXBP3O00186 592 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 GPAA1O43292 621 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 USP2O75604 605 aaPredicted RBP6.8□□□□□ -1.32
VPS39-209ENST00000568029 CHGBP05060 677 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 APPP05067 770 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 CD8BP10966 210 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 GNAT2P19087 354 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 MCM5P33992 734 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 PLA2G5P39877 138 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 MAGEA10P43363 369 aaPredicted RBP6.8□□□□□ -1.32
VPS39-209ENST00000568029 PHKA1P46020 1223 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 INHBEP58166 350 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 KRT85P78386 507 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 CCL15Q16663 113 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 LRSAM1Q6UWE0 723 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 RSPO2Q6UXX9 243 aaPredicted RBP6.8□□□□□ -1.32
VPS39-209ENST00000568029 SPATA5Q8NB90 893 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 NCOA7Q8NI08 942 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 TCEANC2Q96MN5 208 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 MMP19Q99542 508 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 HTATIP2Q9BUP3 242 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 AGXT2Q9BYV1 514 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 SCAND2PQ9GZW5 306 aaPredicted RBP6.8□□□□□ -1.32
VPS39-209ENST00000568029 NCOA5Q9HCD5 579 aaKnown RBP6.8□□□□□ -1.32
VPS39-209ENST00000568029 NAP1L2Q9ULW6 460 aaPredicted RBP6.8□□□□□ -1.32
VPS39-209ENST00000568029 PLAAQ9Y263 795 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 NR2E3Q9Y5X4 410 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 TAF6LQ9Y6J9 622 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 DNAH12Q6ZR08 3092 aa6.8□□□□□ -1.32
VPS39-209ENST00000568029 ZNF532Q9HCE3 1301 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 GOLGA6L4A6NEF3 574 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 THBDP07204 575 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 GJB1P08034 283 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 GSTM1P09488 218 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 C6orf222P0C671 652 aaPredicted RBP6.79□□□□□ -1.32
VPS39-209ENST00000568029 PDE6AP16499 860 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 FUT4P22083 530 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 L1CAMP32004 1257 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 KCNJ6P48051 423 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 GABREP78334 506 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 PRKCZQ05513 592 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 CHRNDQ07001 517 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 BNIP3Q12983 259 aa6.79□□□□□ -1.32
VPS39-209ENST00000568029 DUSP4Q13115 394 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms