RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 PFKPQ01813 784 aa18.9■□□□□ 0.62
CDH3-205ENST00000566808 PRR16Q569H4 304 aa18.9■□□□□ 0.62
CDH3-205ENST00000566808 MRPL10Q7Z7H8 261 aaKnown RBP18.9■□□□□ 0.62
CDH3-205ENST00000566808 LTB4R2Q9NPC1 389 aa18.9■□□□□ 0.62
CDH3-205ENST00000566808 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.9■□□□□ 0.62
CDH3-205ENST00000566808 CDH7Q9ULB5 785 aa18.9■□□□□ 0.62
CDH3-205ENST00000566808 F5P12259 2224 aa18.9■□□□□ 0.62
CDH3-205ENST00000566808 ZZEF1O43149 2961 aa18.9■□□□□ 0.62
CDH3-205ENST00000566808 IGKV6-21A0A0C4DH24 114 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 SLC30A4O14863 429 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 TGM5O43548 720 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 POMCP01189 267 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 SPATA31D3P0C874 917 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 FSHRP23945 695 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 SFNP31947 248 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 JAK3P52333 1124 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 FUT2Q10981 343 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 ZBTB41Q5SVQ8 909 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 TTC22Q5TAA0 569 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 PARM1Q6UWI2 310 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 SYNE3Q6ZMZ3 975 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 SPATA31D4Q6ZUB0 917 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 TAS1R1Q7RTX1 841 aa18.89■□□□□ 0.61
CDH3-205ENST00000566808 RPP25Q9BUL9 199 aaKnown RBP18.89■□□□□ 0.61
CDH3-205ENST00000566808 SEPT9Q9UHD8 586 aaPredicted RBP18.89■□□□□ 0.61
CDH3-205ENST00000566808 MTF2Q9Y483 593 aaPredicted RBP18.89■□□□□ 0.61
CDH3-205ENST00000566808 PKD1L2Q7Z442 2459 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 RPS9P46781 194 aaKnown RBP18.88■□□□□ 0.61
CDH3-205ENST00000566808 CREMQ03060 361 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 MTERF2Q49AM1 385 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 SLC44A4Q53GD3 710 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 DIEXFQ68CQ4 756 aaKnown RBP18.88■□□□□ 0.61
CDH3-205ENST00000566808 APOA5Q6Q788 366 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 PALB2Q86YC2 1186 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 RHPN2Q8IUC4 686 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 COLGALT2Q8IYK4 626 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 GPR65Q8IYL9 337 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 ST13P5Q8NFI4 369 aaPredicted RBP18.88■□□□□ 0.61
CDH3-205ENST00000566808 CLDN23Q96B33 292 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 LENG9Q96B70 501 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 NLRP4Q96MN2 994 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 RAB23Q9ULC3 237 aa18.88■□□□□ 0.61
CDH3-205ENST00000566808 ESYT2A0FGR8 921 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 NCAM2O15394 837 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 GAS2O43903 313 aaKnown RBP18.87■□□□□ 0.61
CDH3-205ENST00000566808 LRP3O75074 770 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 ZMYND10O75800 440 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 CIITAP33076 1130 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 OR1G1P47890 313 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 COL9A3Q14050 684 aaPredicted RBP18.87■□□□□ 0.61
CDH3-205ENST00000566808 RTN1Q16799 776 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 LAIR1Q6GTX8 287 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 REXO1Q8N1G1 1221 aaKnown RBP18.87■□□□□ 0.61
CDH3-205ENST00000566808 CEP89Q96ST8 783 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 NELL2Q99435 816 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 NIFKQ9BYG3 293 aaKnown RBP18.87■□□□□ 0.61
CDH3-205ENST00000566808 LRRC2Q9BYS8 371 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 UBN1Q9NPG3 1134 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 CHST7Q9NS84 486 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 FNIP2Q9P278 1114 aa18.87■□□□□ 0.61
CDH3-205ENST00000566808 SUCLA2Q9P2R7 463 aaPredicted RBP18.87■□□□□ 0.61
CDH3-205ENST00000566808 V9GY48 417 aaPredicted RBP18.87■□□□□ 0.61
CDH3-205ENST00000566808 CHMP2AO43633 222 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 GAS7O60861 476 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 DSC1Q08554 894 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 DMWDQ09019 674 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 XKR3Q5GH77 459 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 LILRA6Q6PI73 481 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 MBOAT7Q96N66 472 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 RIT2Q99578 217 aa18.86■□□□□ 0.61
CDH3-205ENST00000566808 NR1I2O75469 434 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 IGHDP01880 384 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 NCLP19338 710 aaKnown RBP18.85■□□□□ 0.61
CDH3-205ENST00000566808 TARSP26639 723 aaKnown RBP18.85■□□□□ 0.61
CDH3-205ENST00000566808 SPEM2Q0P670 501 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 TSSK4Q6SA08 328 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 TPRG1Q6ZUI0 275 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 GRASPQ7Z6J2 395 aaPredicted RBP18.85■□□□□ 0.61
CDH3-205ENST00000566808 CNNM3Q8NE01 707 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 RDM1Q8NG50 284 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 EXOC6Q8TAG9 804 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 FGF13Q92913 245 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 JPH2Q9BR39 696 aaPredicted RBP18.85■□□□□ 0.61
CDH3-205ENST00000566808 IFT122Q9HBG6 1241 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.85■□□□□ 0.61
CDH3-205ENST00000566808 IGF2RP11717 2491 aa18.85■□□□□ 0.61
CDH3-205ENST00000566808 MAFO75444 373 aaPredicted RBP18.84■□□□□ 0.61
CDH3-205ENST00000566808 HNRNPA1P09651 372 aaKnown RBP eCLIP18.84■□□□□ 0.61
CDH3-205ENST00000566808 CD72P21854 359 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 USP41Q3LFD5 358 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 UBXN11Q5T124 520 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 LRCH2Q5VUJ6 765 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 GLYCTKQ8IVS8 523 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 KSR1Q8IVT5 923 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 PHF20Q9BVI0 1012 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 ZMYND12Q9H0C1 365 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 UNC45AQ9H3U1 944 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 FAM217BQ9NTX9 383 aaPredicted RBP18.84■□□□□ 0.61
CDH3-205ENST00000566808 FBXW11Q9UKB1 542 aa18.84■□□□□ 0.61
CDH3-205ENST00000566808 ANGPTL2Q9UKU9 493 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms