RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 NOL7Q9UMY1 257 aaKnown RBP12.01□□□□□ -0.49
VPS39-208ENST00000564994 MYO10Q9HD67 2058 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 PLXNA3P51805 1871 aa12□□□□□ -0.49
VPS39-208ENST00000564994 A0A1B0GUA9 196 aa12□□□□□ -0.49
VPS39-208ENST00000564994 ARL5CA6NH57 179 aa12□□□□□ -0.49
VPS39-208ENST00000564994 LRRIQ4A6NIV6 560 aa12□□□□□ -0.49
VPS39-208ENST00000564994 TTLL13PA6NNM8 815 aa12□□□□□ -0.49
VPS39-208ENST00000564994 LOC730098B7Z3J9 87 aa12□□□□□ -0.49
VPS39-208ENST00000564994 NRP1O14786 923 aa12□□□□□ -0.49
VPS39-208ENST00000564994 CYP11B2P19099 503 aa12□□□□□ -0.49
VPS39-208ENST00000564994 MLH1P40692 756 aa12□□□□□ -0.49
VPS39-208ENST00000564994 IL17AQ16552 155 aa12□□□□□ -0.49
VPS39-208ENST00000564994 CDCA2Q69YH5 1023 aaPredicted RBP12□□□□□ -0.49
VPS39-208ENST00000564994 PADI6Q6TGC4 694 aa12□□□□□ -0.49
VPS39-208ENST00000564994 COLGALT2Q8IYK4 626 aa12□□□□□ -0.49
VPS39-208ENST00000564994 GSTCDQ8NEC7 633 aa12□□□□□ -0.49
VPS39-208ENST00000564994 MCPH1Q8NEM0 835 aa12□□□□□ -0.49
VPS39-208ENST00000564994 ERMNQ8TAM6 284 aa12□□□□□ -0.49
VPS39-208ENST00000564994 ZFP42Q96MM3 310 aa12□□□□□ -0.49
VPS39-208ENST00000564994 TMEM175Q9BSA9 504 aa12□□□□□ -0.49
VPS39-208ENST00000564994 APOL6Q9BWW8 343 aa12□□□□□ -0.49
VPS39-208ENST00000564994 PHF7Q9BWX1 381 aaPredicted RBP12□□□□□ -0.49
VPS39-208ENST00000564994 FZD8Q9H461 694 aa12□□□□□ -0.49
VPS39-208ENST00000564994 POLD4Q9HCU8 107 aa12□□□□□ -0.49
VPS39-208ENST00000564994 MARCH5Q9NX47 278 aa12□□□□□ -0.49
VPS39-208ENST00000564994 KANSL3Q9P2N6 904 aa12□□□□□ -0.49
VPS39-208ENST00000564994 MUTYHQ9UIF7 546 aa12□□□□□ -0.49
VPS39-208ENST00000564994 IRAK3Q9Y616 596 aa12□□□□□ -0.49
VPS39-208ENST00000564994 MUC6Q6W4X9 2439 aa12□□□□□ -0.49
VPS39-208ENST00000564994 C2orf16Q68DN1 1984 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 ZNF318Q5VUA4 2279 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 WDFY4Q6ZS81 3184 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 ARHGEF35A5YM69 484 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 CARNS1A5YM72 827 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 PP2D1A8MPX8 630 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 ST18O60284 1047 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 NPTXRO95502 500 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 ALDH2P05091 517 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 EDN1P05305 212 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 SRGAP2BP0DMP2 458 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 MUTP22033 750 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 AKAP5P24588 427 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 CA8P35219 290 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 CCT6AP40227 531 aaKnown RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 SCNN1GP51170 649 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 DSC1Q08554 894 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 NCBP1Q09161 790 aaKnown RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 PDIA5Q14554 519 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 CBX2Q14781 532 aaPredicted RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 PTPN14Q15678 1187 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 HERC4Q5GLZ8 1057 aaPredicted RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 HAUS3Q68CZ6 603 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 SLC27A1Q6PCB7 646 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 PPP4R3CPQ6ZMV5 832 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 IGSF22Q8N9C0 903 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 FEZF2Q8TBJ5 459 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 CASP10Q92851 521 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 FAM193BQ96PV7 902 aaPredicted RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 UBN1Q9NPG3 1134 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.99□□□□□ -0.49
VPS39-208ENST00000564994 LRWD1Q9UFC0 647 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 KIAA1024Q9UPX6 916 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 USP20Q9Y2K6 914 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 FAN1Q9Y2M0 1017 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 GIT1Q9Y2X7 761 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 MYH11P35749 1972 aa11.99□□□□□ -0.49
VPS39-208ENST00000564994 DENND4AQ7Z401 1863 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 PRR33A8MZF0 331 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 F8W810 466 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 LILRB3O75022 631 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 EFEMP2O95967 443 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 EPCAMP16422 314 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 HOXB8P17481 243 aaPredicted RBP11.98□□□□□ -0.49
VPS39-208ENST00000564994 GJB2P29033 226 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 CDC25AP30304 524 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 FAM187BQ17R55 369 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 KANK3Q6NY19 840 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 TAS1R1Q7RTX1 841 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 SNX29Q8TEQ0 813 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 SLC22A17Q8WUG5 538 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 RPGRIP1Q96KN7 1286 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 PRIMPOLQ96LW4 560 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 KIFC3Q9BVG8 833 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 TRIM6Q9C030 488 aaPredicted RBP11.98□□□□□ -0.49
VPS39-208ENST00000564994 CCDC113Q9H0I3 377 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 BHMT2Q9H2M3 363 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 DDX19AQ9NUU7 478 aaKnown RBP11.98□□□□□ -0.49
VPS39-208ENST00000564994 PRMT7Q9NVM4 692 aaPredicted RBP11.98□□□□□ -0.49
VPS39-208ENST00000564994 KLK14Q9P0G3 267 aa11.98□□□□□ -0.49
VPS39-208ENST00000564994 PRG3Q9Y2Y8 225 aaPredicted RBP11.98□□□□□ -0.49
VPS39-208ENST00000564994 MTCL1Q9Y4B5 1905 aaKnown RBP11.98□□□□□ -0.49
VPS39-208ENST00000564994 E9PMD0 336 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 SSBP05455 408 aaKnown RBP eCLIP11.97□□□□□ -0.49
VPS39-208ENST00000564994 NAMPTP43490 491 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 OR1G1P47890 313 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 GIT2Q14161 759 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 BMS1Q14692 1282 aaKnown RBP11.97□□□□□ -0.49
VPS39-208ENST00000564994 MCTP1Q6DN14 999 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 KCNK18Q7Z418 384 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms