RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FDPSP14324 419 aaKnown RBP18.79■□□□□ 0.6
CLN3-211ENST00000564091 OR1G1P47890 313 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 AK2P54819 239 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 PTENP60484 403 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 SLFN12Q8IYM2 578 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 PLCD3Q8N3E9 789 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 TMEM105Q8N8V8 129 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 NECAB1Q8N987 351 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 EIF2AK1Q9BQI3 630 aaKnown RBP18.79■□□□□ 0.6
CLN3-211ENST00000564091 APOL6Q9BWW8 343 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 MIOSQ9NXC5 875 aa18.79■□□□□ 0.6
CLN3-211ENST00000564091 A0A087WWV3 80 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 ARL5CA6NH57 179 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 F8W810 466 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 INO80B-WBP1J3KQ70 363 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 SOD2P04179 222 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 KRT2P35908 639 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 MLH1P40692 756 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 CCDC149Q6ZUS6 474 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 COLGALT2Q8IYK4 626 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 CNNM3Q8NE01 707 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 ASAP3Q8TDY4 903 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 TNFRSF25Q93038 417 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 ZFP42Q96MM3 310 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 HSD17B14Q9BPX1 270 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 UBN1Q9NPG3 1134 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 STK39Q9UEW8 545 aa18.78■□□□□ 0.6
CLN3-211ENST00000564091 TEX28O15482 410 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 GALR2O43603 387 aaPredicted RBP18.77■□□□□ 0.6
CLN3-211ENST00000564091 GFRA3O60609 400 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 URODP06132 367 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 SCNN1GP51170 649 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 MXD4Q14582 209 aaPredicted RBP18.77■□□□□ 0.6
CLN3-211ENST00000564091 NOTUMQ6P988 496 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 WASF1Q92558 559 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 ACSF2Q96CM8 615 aaPredicted RBP18.77■□□□□ 0.6
CLN3-211ENST00000564091 RPS6KC1Q96S38 1066 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 HERC2P3Q9BVR0 1158 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 IRF2BPLQ9H1B7 796 aa18.77■□□□□ 0.6
CLN3-211ENST00000564091 WNT7AO00755 349 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 NUBP1P53384 320 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 MBTD1Q05BQ5 628 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 NCBP1Q09161 790 aaKnown RBP18.76■□□□□ 0.59
CLN3-211ENST00000564091 CAPSQ13938 189 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 TFDP1Q14186 410 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 AMHR2Q16671 573 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 OTOP3Q7RTS5 596 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 CDR2LQ86X02 465 aaPredicted RBP18.76■□□□□ 0.59
CLN3-211ENST00000564091 CCDC51Q96ER9 411 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 CSRNP2Q9H175 543 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 MFSD1Q9H3U5 465 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 MAN1C1Q9NR34 630 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 PCDHA12Q9UN75 941 aa18.76■□□□□ 0.59
CLN3-211ENST00000564091 CFAP54Q96N23 3096 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 INPPL1O15357 1258 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 B4GALT5O43286 388 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 ST18O60284 1047 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 LYPLA2O95372 231 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 LARGE1O95461 756 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 ARF4P18085 180 aaPredicted RBP18.75■□□□□ 0.59
CLN3-211ENST00000564091 GLRA2P23416 452 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 AKAP5P24588 427 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 AXLP30530 894 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 ARL2P36404 184 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 FOSBP53539 338 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 DSC1Q08554 894 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 PCBP1Q15365 356 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLN3-211ENST00000564091 CALCRLQ16602 461 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 ME3Q16798 604 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 KIAA0319Q5VV43 1072 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 ASTLQ6HA08 431 aaPredicted RBP18.75■□□□□ 0.59
CLN3-211ENST00000564091 C15orf39Q6ZRI6 1047 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 IFNLR1Q8IU57 520 aaPredicted RBP18.75■□□□□ 0.59
CLN3-211ENST00000564091 FLCNQ8NFG4 579 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 PIGOQ8TEQ8 1089 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 B3GALT6Q96L58 329 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 TRIM6Q9C030 488 aaPredicted RBP18.75■□□□□ 0.59
CLN3-211ENST00000564091 NXF3Q9H4D5 531 aaKnown RBP18.75■□□□□ 0.59
CLN3-211ENST00000564091 TTC12Q9H892 705 aaPredicted RBP18.75■□□□□ 0.59
CLN3-211ENST00000564091 KCNK12Q9HB15 430 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 BRMS1Q9HCU9 246 aa18.75■□□□□ 0.59
CLN3-211ENST00000564091 CCDC195A0A1B0GUA6 201 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 BTBD18B2RXH4 712 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 DGAT1O75907 488 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 EFEMP2O95967 443 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 ADH1AP07327 375 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 SPATA31D3P0C874 917 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 TXKP42681 527 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 GLUD2P49448 558 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 TDGQ13569 410 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 SPATA31D4Q6ZUB0 917 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 RNF168Q8IYW5 571 aaPredicted RBP18.74■□□□□ 0.59
CLN3-211ENST00000564091 CMASQ8NFW8 434 aaPredicted RBP18.74■□□□□ 0.59
CLN3-211ENST00000564091 RABGGTAQ92696 567 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 RXFP1Q9HBX9 757 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 ANKEF1Q9NU02 776 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 SSX2IPQ9Y2D8 614 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 GIT1Q9Y2X7 761 aa18.74■□□□□ 0.59
CLN3-211ENST00000564091 PTPRZ1P23471 2315 aaPredicted RBP18.74■□□□□ 0.59
CLN3-211ENST00000564091 N4BP1O75113 896 aaKnown RBP18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms