RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TTI2Q6NXR4 508 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 RNF10Q8N5U6 811 aaKnown RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 DYDC1Q8WWB3 177 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 CALML4Q96GE6 196 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 ZBED3Q96IU2 234 aaPredicted RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 SLX1AQ9BQ83 275 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 TRIM9Q9C026 710 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 RHOBTB3O94955 611 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 GH2P01242 217 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 SERPINB4P48594 390 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 PDE6CP51160 858 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 ASIC1P78348 528 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 TMEM266Q2M3C6 531 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 CMPK2Q5EBM0 449 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 FKBP1CQ5VVH2 108 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 RRAGAQ7L523 313 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 GBP7Q8N8V2 638 aaPredicted RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 ASAP3Q8TDY4 903 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 CNOT6LQ96LI5 555 aaKnown RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 DUSP9Q99956 384 aaKnown RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 TMEM39BQ9GZU3 492 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 MAF1Q9H063 256 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 TSPYL2Q9H2G4 693 aaPredicted RBP14.29□□□□□ -0.12
CLK3-206ENST00000562078 DPH5Q9H2P9 285 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 AZI2Q9H6S1 392 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 RHBDL2Q9NX52 303 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 CYP39A1Q9NYL5 469 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 SCOCQ9UIL1 159 aa14.29□□□□□ -0.12
CLK3-206ENST00000562078 USP17L15C9J2P7 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L13C9JLJ4 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L11C9JVI0 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L18D6R9N7 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L22D6RA61 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L17D6RBQ6 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L19D6RCP7 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L20D6RJB6 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 KCNK3O14649 394 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 YBX3P16989 372 aaKnown RBP eCLIP14.28□□□□□ -0.122e-6■■■□□ 18.1
CLK3-206ENST00000562078 FXR2P51116 673 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLK3-206ENST00000562078 SNAP25P60880 206 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L24Q0WX57 530 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 LRRC14Q15048 493 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 TSNAXIP1Q2TAA8 658 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 DPY19L2Q6NUT2 758 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 USP17L6PQ6QN14 398 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 PIGOQ8TEQ8 1089 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 RMDN2Q96LZ7 410 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 NUDCD1Q96RS6 583 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLK3-206ENST00000562078 RNF181Q9P0P0 153 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 AMACRQ9UHK6 382 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 SCAF8Q9UPN6 1271 aaKnown RBP14.28□□□□□ -0.12
CLK3-206ENST00000562078 PCDHA1Q9Y5I3 950 aa14.28□□□□□ -0.12
CLK3-206ENST00000562078 F5H6K3 240 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 NDUFB10O96000 172 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 KLRC1P26715 233 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 KLRC3Q07444 240 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 IKQ13123 557 aaPredicted RBP14.27□□□□□ -0.12
CLK3-206ENST00000562078 GRB10Q13322 594 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 RRP1BQ14684 758 aaKnown RBP14.27□□□□□ -0.12
CLK3-206ENST00000562078 MUM1Q2TAK8 710 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 ZC2HC1CQ53FD0 456 aaPredicted RBP14.27□□□□□ -0.12
CLK3-206ENST00000562078 IRGCQ6NXR0 463 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 MIGA2Q7L4E1 593 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 FAM83AQ86UY5 434 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.27□□□□□ -0.12
CLK3-206ENST00000562078 GIMAP8Q8ND71 665 aaPredicted RBP14.27□□□□□ -0.12
CLK3-206ENST00000562078 GJA10Q969M2 543 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 TRIM31Q9BZY9 425 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 DDX25Q9UHL0 483 aaKnown RBP14.27□□□□□ -0.12
CLK3-206ENST00000562078 HERC5Q9UII4 1024 aaKnown RBP14.27□□□□□ -0.12
CLK3-206ENST00000562078 ATAD5Q96QE3 1844 aa14.27□□□□□ -0.12
CLK3-206ENST00000562078 E7ENQ6 273 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 PSMA7O14818 248 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 SUN1O94901 812 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 BPIFB4P59827 614 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 PDE4DQ08499 809 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 ASTE1Q2TB18 679 aaPredicted RBP14.27□□□□□ -0.13
CLK3-206ENST00000562078 FIGNQ5HY92 759 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 LCA5Q86VQ0 697 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 HOOK3Q86VS8 718 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 GPC2Q8N158 579 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 MIPOL1Q8TD10 442 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 CDK5RAP3Q96JB5 506 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 ERGIC2Q96RQ1 377 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 CELF4Q9BZC1 486 aaKnown RBP14.27□□□□□ -0.13
CLK3-206ENST00000562078 GOLPH3Q9H4A6 298 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 CCDC134Q9H6E4 229 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 RXFP1Q9HBX9 757 aa14.27□□□□□ -0.13
CLK3-206ENST00000562078 TCP11X1B4DZS4 312 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 BHMG1C9JSJ3 638 aaPredicted RBP14.26□□□□□ -0.13
CLK3-206ENST00000562078 SPATA31D3P0C874 917 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 CCNB1P14635 433 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 CACNA2D1P54289 1103 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 MCL1Q07820 350 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 SFSWAPQ12872 951 aaKnown RBP14.26□□□□□ -0.13
CLK3-206ENST00000562078 TNFAIP1Q13829 316 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 RCN2Q14257 317 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 SPATA31D4Q6ZUB0 917 aa14.26□□□□□ -0.13
CLK3-206ENST00000562078 CDAN1Q8IWY9 1227 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms