RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SH2B1Q9NRF2 756 aaPredicted RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 KANSL3Q9P2N6 904 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 CNTNAP2Q9UHC6 1331 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 ARL5CA6NH57 179 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 NPTXRO95502 500 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 EPCAMP16422 314 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 AKAP5P24588 427 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 PLA2G5P39877 138 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 MLH1P40692 756 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 OR1G1P47890 313 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 RARS2Q5T160 578 aaKnown RBP11.34□□□□□ -0.59
LDLR-214ENST00000560628 CES5AQ6NT32 575 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 HFE2Q6ZVN8 426 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 TAS1R1Q7RTX1 841 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 NOSTRINQ8IVI9 506 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 ERMNQ8TAM6 284 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 SLC22A17Q8WUG5 538 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 EDAQ92838 391 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 CCDC51Q96ER9 411 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 ZFP42Q96MM3 310 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 TMEM175Q9BSA9 504 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 POLR3CQ9BUI4 534 aaPredicted RBP11.34□□□□□ -0.59
LDLR-214ENST00000560628 TRIM6Q9C030 488 aaPredicted RBP11.34□□□□□ -0.59
LDLR-214ENST00000560628 NXF3Q9H4D5 531 aaKnown RBP11.34□□□□□ -0.59
LDLR-214ENST00000560628 UBN1Q9NPG3 1134 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 TSHZ2Q9NRE2 1034 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 KLK14Q9P0G3 267 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 DBR1Q9UK59 544 aaKnown RBP11.34□□□□□ -0.59
LDLR-214ENST00000560628 USP20Q9Y2K6 914 aa11.34□□□□□ -0.59
LDLR-214ENST00000560628 PRG3Q9Y2Y8 225 aaPredicted RBP11.34□□□□□ -0.59
LDLR-214ENST00000560628 ARHGEF35A5YM69 484 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 CARNS1A5YM72 827 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 C2CD2LO14523 706 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 LIG1P18858 919 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 KLRC2P26717 231 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 RPA1P27694 616 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 CCT6AP40227 531 aaKnown RBP11.33□□□□□ -0.6
LDLR-214ENST00000560628 SCNN1GP51170 649 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 PCBP1Q15365 356 aaKnown RBP eCLIP11.33□□□□□ -0.6
LDLR-214ENST00000560628 PTPN14Q15678 1187 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 ECM1Q16610 540 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 PADI6Q6TGC4 694 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 COLGALT2Q8IYK4 626 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 C4orf32Q8N8J7 132 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 MCPH1Q8NEM0 835 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 FEZF2Q8TBJ5 459 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 BSNDQ8WZ55 320 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 RABGGTAQ92696 567 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 KLHL5Q96PQ7 755 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 ADAM7Q9H2U9 754 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 PARP2Q9UGN5 583 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 NOL7Q9UMY1 257 aaKnown RBP11.33□□□□□ -0.6
LDLR-214ENST00000560628 IRAK3Q9Y616 596 aa11.33□□□□□ -0.6
LDLR-214ENST00000560628 A0A1B0GUA9 196 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 TTLL13PA6NNM8 815 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 F8W810 466 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 CNPP09543 421 aaKnown RBP11.32□□□□□ -0.6
LDLR-214ENST00000560628 MYBP10242 640 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 CYP11B2P19099 503 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 TOB1P50616 345 aaPredicted RBP11.32□□□□□ -0.6
LDLR-214ENST00000560628 ZXDAP98168 799 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 PTGDRQ13258 359 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 GIT2Q14161 759 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 TMEM132AQ24JP5 1023 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 TRIM67Q6ZTA4 783 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 EMILIN2Q9BXX0 1053 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 NFKBIZQ9BYH8 718 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 POMKQ9H5K3 350 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 MRPL17Q9NRX2 175 aaKnown RBP11.32□□□□□ -0.6
LDLR-214ENST00000560628 MARCH5Q9NX47 278 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 LRWD1Q9UFC0 647 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 GIT1Q9Y2X7 761 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 PCDHB6Q9Y5E3 794 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 C5orf42Q9H799 3197 aa11.32□□□□□ -0.6
LDLR-214ENST00000560628 TMEM221A6NGB7 291 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 SPDYE4A6NLX3 237 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 M0R296 226 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 LILRB3O75022 631 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 U2AF2P26368 475 aaKnown RBP eCLIP11.31□□□□□ -0.6
LDLR-214ENST00000560628 TRAPPC10P48553 1259 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 ITIH3Q06033 890 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 DSC1Q08554 894 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 ORC2Q13416 577 aaPredicted RBP11.31□□□□□ -0.6
LDLR-214ENST00000560628 ATAT1Q5SQI0 421 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 MCTP1Q6DN14 999 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 SLC27A1Q6PCB7 646 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 TMC5Q6UXY8 1006 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 ZBTB33Q86T24 672 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 CABP7Q86V35 215 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 ZBTB8OSQ8IWT0 167 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 HACE1Q8IYU2 909 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 GSTCDQ8NEC7 633 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 DEPTORQ8TB45 409 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 PBXIP1Q96AQ6 731 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 COLEC11Q9BWP8 271 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 BHMT2Q9H2M3 363 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 FZD8Q9H461 694 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 PRMT7Q9NVM4 692 aaPredicted RBP11.31□□□□□ -0.6
LDLR-214ENST00000560628 DZANK1Q9NVP4 752 aa11.31□□□□□ -0.6
LDLR-214ENST00000560628 CACNG4Q9UBN1 327 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms