RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ERVK-21P61565 698 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 ATF7IP2Q5U623 682 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 GLB1LQ6UWU2 654 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 LRRC43Q8N309 656 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 DEFB123Q8N688 67 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 FSIP1Q8NA03 581 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 TMEM87AQ8NBN3 555 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 CLP1Q92989 425 aaKnown RBP14.29□□□□□ -0.12
NEDD8-208ENST00000560427 FIZ1Q96SL8 496 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 SEMA6BQ9H3T3 888 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 PDZD7Q9H5P4 517 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 IPPQ9Y573 584 aa14.29□□□□□ -0.12
NEDD8-208ENST00000560427 RBAK-RBAKDNI3L0D1 243 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 PIGRP01833 764 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 FGFR1P11362 822 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 IDEP14735 1019 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 LIG1P18858 919 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 GTF2BQ00403 316 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 STXBP4Q6ZWJ1 553 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 TAS1R3Q7RTX0 852 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 SFR1Q86XK3 245 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 MAP4K3Q8IVH8 894 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 RNF169Q8NCN4 708 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 ACO2Q99798 780 aaKnown RBP14.28□□□□□ -0.12
NEDD8-208ENST00000560427 EIF2AQ9BY44 585 aaKnown RBP14.28□□□□□ -0.12
NEDD8-208ENST00000560427 RSAD1Q9HA92 442 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 PANK4Q9NVE7 773 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 TBX20Q9UMR3 447 aa14.28□□□□□ -0.12
NEDD8-208ENST00000560427 TCHHQ07283 1943 aa14.27□□□□□ -0.12
NEDD8-208ENST00000560427 PVALEFA0A1B0GWK0 134 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 TBKBP1A7MCY6 615 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 INPPL1O15357 1258 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 TOM1L1O75674 476 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 NPTXRO95502 500 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 RB1P06400 928 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 ITGA4P13612 1032 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 IBSPP21815 317 aaPredicted RBP14.27□□□□□ -0.13
NEDD8-208ENST00000560427 PROZP22891 400 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 ASIC1P78348 528 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 HERC4Q5GLZ8 1057 aaPredicted RBP14.27□□□□□ -0.13
NEDD8-208ENST00000560427 NT5DC1Q5TFE4 455 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 AGMOQ6ZNB7 445 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 UNC13DQ70J99 1090 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 ZNF720Q7Z2F6 126 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 SMG8Q8ND04 991 aaKnown RBP14.27□□□□□ -0.13
NEDD8-208ENST00000560427 PLVAPQ9BX97 442 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 GOLPH3LQ9H4A5 285 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 MRPL44Q9H9J2 332 aaKnown RBP14.27□□□□□ -0.13
NEDD8-208ENST00000560427 PTPRHQ9HD43 1115 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 AAASQ9NRG9 546 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 RNF19AQ9NV58 838 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 SERTAD1Q9UHV2 236 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 GIT1Q9Y2X7 761 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 MYH11P35749 1972 aa14.27□□□□□ -0.13
NEDD8-208ENST00000560427 TTLL13PA6NNM8 815 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 C5orf67F2Z3F1 127 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 PPP1R37O75864 691 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 ARHGEF15O94989 841 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 EDN1P05305 212 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 LINC00271P0C7V0 271 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 MCF2P10911 925 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 LAG3P18627 525 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 COASYQ13057 564 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 ZNF568Q3ZCX4 644 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 LONRF3Q496Y0 759 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 NOMO2Q5JPE7 1267 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 CLLU1OSQ5K130 101 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 KANK3Q6NY19 840 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 MPZL3Q6UWV2 235 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 KRBA2Q6ZNG9 492 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 CLEC17AQ6ZS10 378 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 URGCPQ8TCY9 931 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 PAGE5Q96GU1 130 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 CASD1Q96PB1 797 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 TARS2Q9BW92 718 aaKnown RBP14.26□□□□□ -0.13
NEDD8-208ENST00000560427 STRA6Q9BX79 667 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 NXF3Q9H4D5 531 aaKnown RBP14.26□□□□□ -0.13
NEDD8-208ENST00000560427 MTMR10Q9NXD2 777 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 KANSL3Q9P2N6 904 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 EXOC7Q9UPT5 735 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 PCDHB13Q9Y5F0 798 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 MRPL42Q9Y6G3 142 aaKnown RBP14.26□□□□□ -0.13
NEDD8-208ENST00000560427 RALGAPA2Q2PPJ7 1873 aa14.26□□□□□ -0.13
NEDD8-208ENST00000560427 UBE4BO95155 1302 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 HNRNPDLO14979 420 aaKnown RBP14.25□□□□□ -0.13
NEDD8-208ENST00000560427 GTPBP6O43824 516 aaPredicted RBP14.25□□□□□ -0.13
NEDD8-208ENST00000560427 OFD1O75665 1012 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 ZNF202O95125 648 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 NMT1P30419 496 aaKnown RBP14.25□□□□□ -0.13
NEDD8-208ENST00000560427 LIG4P49917 911 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 GATMP50440 423 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 FAM160A1Q05DH4 1040 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 MCL1Q07820 350 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 NOLC1Q14978 699 aaKnown RBP eCLIP14.25□□□□□ -0.13
NEDD8-208ENST00000560427 KYAT1Q16773 422 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 PAN2Q504Q3 1202 aaKnown RBP14.25□□□□□ -0.13
NEDD8-208ENST00000560427 EPC2Q52LR7 807 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 EEF1DP3Q658K8 133 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 Q7L0L9 218 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 CDR2LQ86X02 465 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms