RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 ATF7IP2Q5U623 682 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 MRPL10Q7Z7H8 261 aaKnown RBP13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 RTN4RL1Q86UN2 441 aaPredicted RBP13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 SFR1Q86XK3 245 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 ECHDC2Q86YB7 292 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 MAP4K3Q8IVH8 894 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 ABI1Q8IZP0 508 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 ZNF668Q96K58 619 aaPredicted RBP13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 SAMD11Q96NU1 681 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 ACCSQ96QU6 501 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 TSPAN18Q96SJ8 248 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 MRPL9Q9BYD2 267 aaKnown RBP13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 GOLPH3LQ9H4A5 285 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 EXOC1Q9NV70 894 aa13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 CXXC1Q9P0U4 656 aaPredicted RBP13.23□□□□□ -0.29
RABGGTA-215ENST00000560207 ADGRA3Q8IWK6 1321 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 HNRNPDLO14979 420 aaKnown RBP13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 CLDN3O15551 220 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 TLL1O43897 1013 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 GCNT3O95395 438 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 MCF2P10911 925 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 LIG4P49917 911 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 HTRA4P83105 476 aaPredicted RBP13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 CACNB1Q02641 598 aaPredicted RBP13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 EHHADHQ08426 723 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 COASYQ13057 564 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 CRIPAKQ8N1N5 446 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 GOLGA5Q8TBA6 731 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 BICD1Q96G01 975 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 ACO2Q99798 780 aaKnown RBP13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 TCHPQ9BT92 498 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 STRA6Q9BX79 667 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 PCDHB2Q9Y5E7 798 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 NLRC5Q86WI3 1866 aa13.22□□□□□ -0.29
RABGGTA-215ENST00000560207 TRIOBPQ9H2D6 2365 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 CSDE1O75534 798 aaKnown RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 PPP1R37O75864 691 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 DGKIO75912 1065 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 RHOBTB3O94955 611 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 LDHAP00338 332 aaKnown RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 RPN1P04843 607 aaKnown RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 FGFR4P22455 802 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 DPYDQ12882 1025 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 CUL4BQ13620 913 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 L1TD1Q5T7N2 865 aaKnown RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 FAM109BQ6ICB4 259 aaPredicted RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 GLB1LQ6UWU2 654 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 MPZL3Q6UWV2 235 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 CMTR2Q8IYT2 770 aaKnown RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 LINC01599Q8WXQ3 324 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 STAMQ92783 540 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 FIZ1Q96SL8 496 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 YME1L1Q96TA2 773 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 OSBPL7Q9BZF2 842 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 TMEM117Q9H0C3 514 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 AAASQ9NRG9 546 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 TOPORSQ9NS56 1045 aaPredicted RBP13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 GIT1Q9Y2X7 761 aa13.21□□□□□ -0.29
RABGGTA-215ENST00000560207 MGEA5O60502 916 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 NR1I2O75469 434 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 ITGA4P13612 1032 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 LIG1P18858 919 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 PROZP22891 400 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 NMT1P30419 496 aaKnown RBP13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 YARSP54577 528 aaKnown RBP13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 DEFB103AP81534 67 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 NOLC1Q14978 699 aaKnown RBP eCLIP13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 ZNF568Q3ZCX4 644 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 NT5DC1Q5TFE4 455 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 HS2ST1Q7LGA3 356 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 ZNF598Q86UK7 904 aaKnown RBP13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 SYCP3Q8IZU3 236 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 TRIML1Q8N9V2 468 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 ZNF507Q8TCN5 953 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 URGCPQ8TCY9 931 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 SP7Q8TDD2 431 aaPredicted RBP13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 SMARCE1Q969G3 411 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 KIFC3Q9BVG8 833 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 CCDC94Q9BW85 323 aaPredicted RBP13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 PDZD7Q9H5P4 517 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 SLC28A3Q9HAS3 691 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 POLD4Q9HCU8 107 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 PTPRHQ9HD43 1115 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 LMBRD1Q9NUN5 540 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 STK39Q9UEW8 545 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 TRIP11Q15643 1979 aa13.2□□□□□ -0.3
RABGGTA-215ENST00000560207 INPPL1O15357 1258 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 KLRC4O43908 158 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 GADD45BO75293 160 aaPredicted RBP13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 UPP2O95045 317 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 GARTP22102 1010 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 MCL1Q07820 350 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 STIM1Q13586 685 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 BMT2Q1RMZ1 405 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 TCTN1Q2MV58 587 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 COBLL1Q53SF7 1204 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 HABP4Q5JVS0 413 aaKnown RBP13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 UBXN11Q5T124 520 aa13.19□□□□□ -0.3
RABGGTA-215ENST00000560207 EPM2AIP1Q7L775 607 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms