RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 KYNUQ16719 465 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 TMC3Q7Z5M5 1100 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 FUKQ8N0W3 1084 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 SPATA20Q8TB22 786 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 ACTRT1Q8TDG2 376 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PYROXD1Q8WU10 500 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 FGD4Q96M96 766 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 TMEM206Q9H813 350 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 TRPC6Q9Y210 931 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 TOM1L1O75674 476 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 ATP5HO75947 161 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 LMNAP02545 664 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 ALAS1P13196 640 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 FXR2P51116 673 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP3-210ENST00000559192 VAMP7P51809 220 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 ELF3P78545 371 aaPredicted RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 IFI35P80217 286 aaPredicted RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 PPP2R5CQ13362 524 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 QRICH1Q2TAL8 776 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 CENPPQ6IPU0 288 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 CENPUQ71F23 418 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 DAGLBQ8NCG7 672 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 C3orf20Q8ND61 904 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 CDCA7Q9BWT1 371 aaPredicted RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 SMYD3Q9H7B4 428 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 SIK3Q9Y2K2 1263 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 RIC1Q4ADV7 1423 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 H7C0C1 242 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PDXKO00764 312 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 KRT10P13645 584 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 CD58P19256 250 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 ATP5OP48047 213 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 FMO5P49326 533 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PEX3P56589 373 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 SBK1Q52WX2 424 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 SYCP2LQ5T4T6 812 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PPP4R1Q8TF05 950 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 FAM161BQ96MY7 647 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 MXD3Q9BW11 206 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 STK33Q9BYT3 514 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 TRIM55Q9BYV6 548 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PABPC3Q9H361 631 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 ATP6V0A4Q9HBG4 840 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 UBN1Q9NPG3 1134 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 KMT5AQ9NQR1 393 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 APEX2Q9UBZ4 518 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 SLC16A3O15427 465 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 KLRC4O43908 158 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 SHBGP04278 402 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 GPS1Q13098 491 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 NXNQ6DKJ4 435 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 IFT122Q9HBG6 1241 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 BATF3Q9NR55 127 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 TRPA1O75762 1119 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 CPP00450 1065 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 EEF1DP29692 281 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 ITGA8P53708 1063 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PDIA2Q13087 525 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 PPP1R18Q6NYC8 613 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 ST13P4Q8IZP2 240 aaPredicted RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 TRABDQ9H4I3 376 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 STOML1Q9UBI4 398 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PPARGC1AQ9UBK2 798 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 HAO1Q9UJM8 370 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 MRPL11Q9Y3B7 192 aaKnown RBP7.58□□□□□ -1.2
USP3-210ENST00000559192 ALG6Q9Y672 507 aa7.58□□□□□ -1.2
USP3-210ENST00000559192 PIK3C2AO00443 1686 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ABCB11O95342 1321 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 RSPH10B2B2RC85 870 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SLC16A4O15374 487 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SHOX2O60902 331 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 TMEM253P0C7T8 217 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 RSPH10BP0C881 870 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 TNFRSF8P28908 595 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 CASP4P49662 377 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 KCNMA1Q12791 1236 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 P3H1Q32P28 736 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 BRINP3Q76B58 766 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ZNF280CQ8ND82 737 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 TRIM11Q96F44 468 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 C11orf70Q9BRQ4 267 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 SLC4A7Q9Y6M7 1214 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 C1orf167Q5SNV9 1468 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 RTN2O75298 545 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 CTCFP49711 727 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 MTM1Q13496 603 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 HADHQ16836 314 aaKnown RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 PREPLQ4J6C6 727 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 FAM182BQ5T319 152 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 ARHGEF16Q5VV41 709 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 RGS9BPQ6ZS82 235 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 IRF2BP1Q8IU81 584 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 KIAA2013Q8IYS2 634 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 NEDD1Q8NHV4 660 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 FBXO25Q8TCJ0 367 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 TSC22D4Q9Y3Q8 395 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 WTIPA6NIX2 430 aaPredicted RBP7.57□□□□□ -1.2
USP3-210ENST00000559192 SERPINI2O75830 405 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 GGPS1O95749 300 aa7.57□□□□□ -1.2
USP3-210ENST00000559192 BMP3P12645 472 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms