RNA–Protein interactions for RNA: ENST00000558970.2

GABPB1-208, Transcript of GA binding protein transcription factor subunit beta 1, human

TSL 5

Gene GABPB1, Length 730 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GABPB1-208	ENST00000558970	MRPL4	Q9BYD3	311 aa	Known RBP	13.64	□□□□□ -0.23
GABPB1-208	ENST00000558970	PDZD7	Q9H5P4	517 aa		13.64	□□□□□ -0.23
GABPB1-208	ENST00000558970	RMND1	Q9NWS8	449 aa		13.64	□□□□□ -0.23
GABPB1-208	ENST00000558970	KCNG1	Q9UIX4	513 aa		13.64	□□□□□ -0.23
GABPB1-208	ENST00000558970	PCDHB13	Q9Y5F0	798 aa		13.64	□□□□□ -0.23
GABPB1-208	ENST00000558970	CIT	O14578	2027 aa		13.64	□□□□□ -0.23
GABPB1-208	ENST00000558970	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	ZMYM2	Q9UBW7	1377 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	KIAA1671	Q9BY89	1806 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	ANKRD63	C9JTQ0	380 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	SOX1	O00570	391 aa	Predicted RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	PPP1R37	O75864	691 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	PTMS	P20962	102 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	HOXA11	P31270	313 aa	Predicted RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	KCNJ6	P48051	423 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	OSTN	P61366	133 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	WDR5	P61964	334 aa	Known RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	PSMD2	Q13200	908 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	KCNB1	Q14721	858 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	FAM187B	Q17R55	369 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	ZNF568	Q3ZCX4	644 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	SEZ6	Q53EL9	994 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	CCDC183	Q5T5S1	534 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	PPP4R3CP	Q6ZMV5	832 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	STXBP4	Q6ZWJ1	553 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	MAP4K3	Q8IVH8	894 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	SCFD1	Q8WVM8	642 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	LPP	Q93052	612 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	RNPC3	Q96LT9	517 aa	Known RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	PRIMPOL	Q96LW4	560 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	GSDMA	Q96QA5	445 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	ACCS	Q96QU6	501 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	ACO2	Q99798	780 aa	Known RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	TRIM6	Q9C030	488 aa	Predicted RBP	13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	KIAA1468	Q9P260	1216 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	HES2	Q9Y543	173 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	ANK1	P16157	1881 aa		13.63	□□□□□ -0.23
GABPB1-208	ENST00000558970	RALGAPA2	Q2PPJ7	1873 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	ENPP3	O14638	875 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	N4BP3	O15049	544 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	SARS	P49591	514 aa	Known RBP	13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	DSC3	Q14574	896 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	LRIT3	Q3SXY7	679 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	ZNF658	Q5TYW1	1059 aa	Predicted RBP	13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	SLC39A4	Q6P5W5	647 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	SLC27A1	Q6PCB7	646 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	EPM2AIP1	Q7L775	607 aa	Predicted RBP	13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	CEP120	Q8N960	986 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	ADPGK	Q9BRR6	497 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	STRA6	Q9BX79	667 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	FTHL17	Q9BXU8	183 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	ST6GALNAC4	Q9H4F1	302 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	LRFN2	Q9ULH4	789 aa		13.62	□□□□□ -0.23
GABPB1-208	ENST00000558970	PDCD11	Q14690	1871 aa	Known RBP	13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	NLRC5	Q86WI3	1866 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	ABHD14A-ACY1	A0A1B0GW23	586 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	MEIS3P2	A8K0S8	358 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	CLIC2	O15247	247 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	EIF3D	O15371	548 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	AXL	P30530	894 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	HOXD13	P35453	343 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	PRCP	P42785	496 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	GATM	P50440	423 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	ALCAM	Q13740	583 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	KLHL40	Q2TBA0	621 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	UBXN11	Q5T124	520 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	KLHL10	Q6JEL2	608 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	THNSL1	Q8IYQ7	743 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	SPATA20	Q8TB22	786 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	SYAP1	Q96A49	352 aa	Predicted RBP	13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	HVCN1	Q96D96	273 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	HAPLN2	Q9GZV7	340 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	CDT1	Q9H211	546 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	NXF3	Q9H4D5	531 aa	Known RBP	13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	PCIF1	Q9H4Z3	704 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	RGS18	Q9NS28	235 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	FAM105A	Q9NUU6	356 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	RNF19A	Q9NV58	838 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	EXOC7	Q9UPT5	735 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	PCDHB2	Q9Y5E7	798 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	SLC4A7	Q9Y6M7	1214 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	LAMA2	P24043	3122 aa	Known RBP	13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970	TTC3	P53804	2025 aa		13.61	□□□□□ -0.23
GABPB1-208	ENST00000558970		A0A1B0GUA9	196 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970		C9IYK1	514 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	CLDN3	O15551	220 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	BAIAP3	O94812	1187 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	AMH	P03971	560 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	CD44	P16070	742 aa	Known RBP	13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	BMP6	P22004	513 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	AKAP5	P24588	427 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	MORC3	Q14149	939 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	ARMCX5	Q6P1M9	558 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	MPZL3	Q6UWV2	235 aa		13.6	□□□□□ -0.23
GABPB1-208	ENST00000558970	SLC24A5	Q71RS6	500 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms