RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RXRAP19793 462 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 FGFR3P22607 806 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 CCND1P24385 295 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 CYP2C19P33261 490 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 KRT2P35908 639 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 IREB2P48200 963 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 TRAPPC10P48553 1259 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 MRPL12P52815 198 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 NLRP5P59047 1200 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 ETF1P62495 437 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 SETQ01105 290 aaPredicted RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 KLRC3Q07444 240 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 C19orf57Q0VDD7 668 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 GBX1Q14549 363 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 SEPT2Q15019 361 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 CCDC96Q2M329 555 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 RILPL1Q5EBL4 403 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 C10orf62Q5T681 223 aaPredicted RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 KRT40Q6A162 431 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 IQSEC1Q6DN90 963 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 ARMC9Q7Z3E5 817 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 NBPF11Q86T75 865 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 DDX53Q86TM3 631 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 MRPL41Q8IXM3 137 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 CCDC144CPQ8IYA2 1237 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 SCYL3Q8IZE3 742 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 TNFRSF25Q93038 417 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 ACSF2Q96CM8 615 aaPredicted RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 ABHD17AQ96GS6 310 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 RCC1LQ96I51 464 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 WNK4Q96J92 1243 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 NUP88Q99567 741 aaPredicted RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 MYL10Q9BUA6 226 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 WDR18Q9BV38 432 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 TMEM39BQ9GZU3 492 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 LACRTQ9GZZ8 138 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 RIOX1Q9H6W3 641 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 C6orf50Q9HD87 102 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 MAD2L2Q9UI95 211 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 ZNF112Q9UJU3 913 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 INTUQ9ULD6 942 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 LUC7L2Q9Y383 392 aaKnown RBP5.77□□□□□ -1.49
LDLR-209ENST00000558528 PCDHAC2Q9Y5I4 1007 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 A0A1B0GUL6 1792 aa5.77□□□□□ -1.49
LDLR-209ENST00000558528 ELP1O95163 1332 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 COL4A5P29400 1685 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 PRAMEF27A3QJZ7 478 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 SPDYE3A6NKU9 549 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 NEMP1O14524 444 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 TBX3O15119 743 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 WDR46O15213 610 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 FANCGO15287 622 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 YEATS4O95619 227 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 MMP1P03956 469 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 THBS1P07996 1170 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 CPB1P15086 417 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 U2AF2P26368 475 aaKnown RBP eCLIP5.76□□□□□ -1.49
LDLR-209ENST00000558528 GBP1P32455 592 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 RECQLP46063 649 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 UBE2HP62256 183 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 ZNF543Q08ER8 600 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 TBC1D8BQ0IIM8 1120 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 GRB10Q13322 594 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 ORC2Q13416 577 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 PTPN21Q16825 1174 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 INO80DQ53TQ3 878 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 NOL9Q5SY16 702 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 ZNF468Q5VIY5 522 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 CDCA2Q69YH5 1023 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 ZCCHC8Q6NZY4 707 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 BTNL9Q6UXG8 535 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 MIGA2Q7L4E1 593 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 ADAT2Q7Z6V5 191 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 PPFIBP1Q86W92 1011 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 TRIM59Q8IWR1 403 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 SRBD1Q8N5C6 995 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 KCT2Q8NC54 265 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 KCNG4Q8TDN1 519 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 PHKBQ93100 1093 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 CCDC34Q96HJ3 373 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 TEPSINQ96N21 525 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 AIFM3Q96NN9 605 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 TRIM8Q9BZR9 551 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 KIAA1683Q9H0B3 1180 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 SMG9Q9H0W8 520 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 CCDC86Q9H6F5 360 aaKnown RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 DNAJC18Q9H819 358 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 VCPKMTQ9H867 229 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 SENP2Q9HC62 589 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 BARHL2Q9NY43 387 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 GGA3Q9NZ52 723 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 ZNF69Q9UC07 566 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 IP6K2Q9UHH9 426 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 GDF2Q9UK05 429 aaPredicted RBP5.76□□□□□ -1.49
LDLR-209ENST00000558528 FEM1BQ9UK73 627 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 ZBTB21Q9ULJ3 1066 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 SLC6A14Q9UN76 642 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 ZDHHC9Q9Y397 364 aa5.76□□□□□ -1.49
LDLR-209ENST00000558528 CTDP1Q9Y5B0 961 aaPredicted RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms