RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 SCFD1Q8WVM8 642 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 HERVK_113Q902F9 699 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 CCDC51Q96ER9 411 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 TCHPQ9BT92 498 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 PDZD7Q9H5P4 517 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 TMEM206Q9H813 350 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 RGS18Q9NS28 235 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 C1orf112Q9NSG2 853 aa23.32■■□□□ 1.32
CASC4-204ENST00000557945 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.31■■□□□ 1.32
CASC4-204ENST00000557945 MATR3P43243 847 aaKnown RBP eCLIP23.31■■□□□ 1.32
CASC4-204ENST00000557945 SHHQ15465 462 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 KLHL40Q2TBA0 621 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 ZNF658Q5TYW1 1059 aaPredicted RBP23.31■■□□□ 1.32
CASC4-204ENST00000557945 EEF1DP3Q658K8 133 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 SLC27A1Q6PCB7 646 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 SLC24A5Q71RS6 500 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 SMYD4Q8IYR2 804 aaPredicted RBP23.31■■□□□ 1.32
CASC4-204ENST00000557945 MYOCDQ8IZQ8 938 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 SYAP1Q96A49 352 aaPredicted RBP23.31■■□□□ 1.32
CASC4-204ENST00000557945 ADPGKQ9BRR6 497 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 TRIM6Q9C030 488 aaPredicted RBP23.31■■□□□ 1.32
CASC4-204ENST00000557945 IKZF4Q9H2S9 585 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 ANKFY1Q9P2R3 1169 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 MAPK8IP1Q9UQF2 711 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 TNFSF13BQ9Y275 285 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 UBE4BO95155 1302 aa23.31■■□□□ 1.32
CASC4-204ENST00000557945 NPTXRO95502 500 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 AMHP03971 560 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 WDR5P61964 334 aaKnown RBP23.3■■□□□ 1.32
CASC4-204ENST00000557945 ZNF568Q3ZCX4 644 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 UBXN11Q5T124 520 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 CHRDL2Q6WN34 429 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 ZBTB33Q86T24 672 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 RNPC3Q96LT9 517 aaKnown RBP23.3■■□□□ 1.32
CASC4-204ENST00000557945 EIF2AQ9BY44 585 aaKnown RBP23.3■■□□□ 1.32
CASC4-204ENST00000557945 GTPBP4Q9BZE4 634 aaKnown RBP23.3■■□□□ 1.32
CASC4-204ENST00000557945 FAM105AQ9NUU6 356 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 CXXC1Q9P0U4 656 aaPredicted RBP23.3■■□□□ 1.32
CASC4-204ENST00000557945 TMEM63CQ9P1W3 806 aa23.3■■□□□ 1.32
CASC4-204ENST00000557945 TNRC18O15417 2968 aaPredicted RBP23.3■■□□□ 1.32
CASC4-204ENST00000557945 TOM1L1O75674 476 aa23.29■■□□□ 1.32
CASC4-204ENST00000557945 PIGRP01833 764 aa23.29■■□□□ 1.32
CASC4-204ENST00000557945 HARSP12081 509 aaKnown RBP23.29■■□□□ 1.32
CASC4-204ENST00000557945 SKOR2Q2VWA4 1001 aaPredicted RBP23.29■■□□□ 1.32
CASC4-204ENST00000557945 APBB1IPQ7Z5R6 666 aaPredicted RBP23.29■■□□□ 1.32
CASC4-204ENST00000557945 RNF169Q8NCN4 708 aa23.29■■□□□ 1.32
CASC4-204ENST00000557945 ZBTB45Q96K62 511 aaPredicted RBP23.29■■□□□ 1.32
CASC4-204ENST00000557945 SLC4A7Q9Y6M7 1214 aa23.29■■□□□ 1.32
CASC4-204ENST00000557945 C9IYK1 514 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 ANKRD63C9JTQ0 380 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 CLDN3O15551 220 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 KIF20AO95235 890 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 SKIP12755 728 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 BMP8BP34820 402 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 HOXD13P35453 343 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 DEFB103AP81534 67 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 MORC3Q14149 939 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 BMT2Q1RMZ1 405 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 MPZL3Q6UWV2 235 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 LRFN2Q9ULH4 789 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 PCDHB2Q9Y5E7 798 aa23.28■■□□□ 1.32
CASC4-204ENST00000557945 A0A0U1RQF3 1178 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 TISP43B9A030 160 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 RAB27AP51159 221 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 KNOP1Q1ED39 458 aaKnown RBP23.27■■□□□ 1.32
CASC4-204ENST00000557945 SLC39A4Q6P5W5 647 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 ECHDC2Q86YB7 292 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 TRIML1Q8N9V2 468 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 TRAIPQ9BWF2 469 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 GBP3Q9H0R5 595 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 CDT1Q9H211 546 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 PTPRHQ9HD43 1115 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 MICAL3Q7RTP6 2002 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 ZMYM2Q9UBW7 1377 aa23.27■■□□□ 1.32
CASC4-204ENST00000557945 UPP2O95045 317 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 PROZP22891 400 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 FAM189BP81408 668 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 DCAF4L1Q3SXM0 396 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 FAM117BQ6P1L5 589 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 GUF1Q8N442 669 aaKnown RBP23.27■■□□□ 1.31
CASC4-204ENST00000557945 APOL6Q9BWW8 343 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 PCDHB7Q9Y5E2 793 aa23.27■■□□□ 1.31
CASC4-204ENST00000557945 STAG3L1P0CL83 205 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 MCF2P10911 925 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 BMP6P22004 513 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 PRCPP42785 496 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 STIM1Q13586 685 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 NOLC1Q14978 699 aaKnown RBP eCLIP23.26■■□□□ 1.31
CASC4-204ENST00000557945 SLFN12LQ6IEE8 588 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 HS2ST1Q7LGA3 356 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 TMCO2Q7Z6W1 182 aaPredicted RBP23.26■■□□□ 1.31
CASC4-204ENST00000557945 NPAS4Q8IUM7 802 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 HACE1Q8IYU2 909 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 POMGNT1Q8WZA1 660 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 NXF3Q9H4D5 531 aaKnown RBP23.26■■□□□ 1.31
CASC4-204ENST00000557945 RNF216Q9NWF9 866 aaPredicted RBP23.26■■□□□ 1.31
CASC4-204ENST00000557945 HES2Q9Y543 173 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 IPPQ9Y573 584 aa23.26■■□□□ 1.31
CASC4-204ENST00000557945 ABLIM1O14639 778 aa23.25■■□□□ 1.31
CASC4-204ENST00000557945 ATP2A2P16615 1042 aaKnown RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms