RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 CNNM4Q6P4Q7 775 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 CCDC186Q7Z3E2 898 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 CPXCR1Q8N123 301 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 CRIPAKQ8N1N5 446 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 DCLK2Q8N568 766 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 SLC43A3Q8NBI5 491 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 TRPV1Q8NER1 839 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 ANKRD20A12PQ8NF67 263 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 CYP2W1Q8TAV3 490 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 LARP4BQ92615 738 aaKnown RBP7.55□□□□□ -1.2
SLIRP-204ENST00000555890 RAD54LQ92698 747 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 ASIC4Q96FT7 647 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 C12orf42Q96LP6 360 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 AGBL1Q96MI9 1066 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 PNMA5Q96PV4 448 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 CTAGE1Q96RT6 745 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 TRIM9Q9C026 710 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 XPO4Q9C0E2 1151 aaKnown RBP7.55□□□□□ -1.2
SLIRP-204ENST00000555890 SLC38A10Q9HBR0 1119 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 RRAGDQ9NQL2 400 aaPredicted RBP7.55□□□□□ -1.2
SLIRP-204ENST00000555890 EXOC1Q9NV70 894 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 FLRT1Q9NZU1 646 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 LMCD1Q9NZU5 365 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 NFE2L3Q9Y4A8 694 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 LOC285556D6RIA3 1793 aa7.55□□□□□ -1.2
SLIRP-204ENST00000555890 LOXHD1Q8IVV2 1947 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 IGF2RP11717 2491 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 FAM86B1E9PN63 330 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 DNM1LO00429 736 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 PSMA7O14818 248 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 KLRC4O43908 158 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 ZNF500O60304 480 aaPredicted RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 CLTBP09497 229 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 FAM86B2P0C5J1 330 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 ALAS1P13196 640 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 PLA2G2AP14555 144 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 PTGS1P23219 599 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 FSHRP23945 695 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 GCLCP48506 637 aaPredicted RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 HSD17B4P51659 736 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 OAZ1P54368 228 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 SETQ01105 290 aaPredicted RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 GHRHRQ02643 423 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 PAK1Q13153 545 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 COG2Q14746 738 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 ARID5BQ14865 1188 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 TKFCQ3LXA3 575 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 TMEM119Q4V9L6 283 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 TBCELQ5QJ74 424 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 NCAPH2Q6IBW4 605 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 UNC13DQ70J99 1090 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 C16orf59Q7L2K0 433 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 GPR161Q8N6U8 529 aaKnown RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 GIMAP8Q8ND71 665 aaPredicted RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 ETNPPLQ8TBG4 499 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 NOC3LQ8WTT2 800 aaKnown RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 NELFBQ8WX92 580 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 TBC1D5Q92609 795 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 DHTKD1Q96HY7 919 aaPredicted RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 NIF3L1Q9GZT8 377 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 MAF1Q9H063 256 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 ASCC2Q9H1I8 757 aaPredicted RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 MTIF3Q9H2K0 278 aaKnown RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 CCSER2Q9H7U1 834 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 RAVER2Q9HCJ3 691 aaKnown RBP7.54□□□□□ -1.2
SLIRP-204ENST00000555890 BLOC1S4Q9NUP1 217 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 HOXC10Q9NYD6 342 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 RBPJLQ9UBG7 517 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 CTNND2Q9UQB3 1225 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 PCDHA11Q9Y5I1 949 aa7.54□□□□□ -1.2
SLIRP-204ENST00000555890 COL11A1P12107 1806 aaPredicted RBP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 IGLV3-22A0A075B6J6 115 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 BICDL2A1A5D9 508 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 VWA5AO00534 786 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 CDK2AP1O14519 115 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 MSH4O15457 936 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 SSBP05455 408 aaKnown RBP eCLIP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 KRT18P05783 430 aaKnown RBP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 ATP1A3P13637 1013 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 ZNF18P17022 549 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 MZF1P28698 734 aaPredicted RBP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 HMGCS2P54868 508 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 STX17P56962 302 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 LMNB2Q03252 620 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 TLE2Q04725 743 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 PPIGQ13427 754 aaKnown RBP eCLIP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 CEP55Q53EZ4 464 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 COBLL1Q53SF7 1204 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 C1orf53Q5VUE5 145 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 NIPA1Q7RTP0 329 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 TMC6Q7Z403 805 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 FILIP1Q7Z7B0 1213 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 SMYD4Q8IYR2 804 aaPredicted RBP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 ZNF513Q8N8E2 541 aaPredicted RBP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 CCDC150Q8NCX0 1101 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 NEK9Q8TD19 979 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 FBF1Q8TES7 1133 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 SLC5A5Q92911 643 aa7.53□□□□□ -1.2
SLIRP-204ENST00000555890 ZNF830Q96NB3 372 aaPredicted RBP7.53□□□□□ -1.2
SLIRP-204ENST00000555890 TRERF1Q96PN7 1200 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms