RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 MRPL44Q9H9J2 332 aaKnown RBP11.98□□□□□ -0.49
SHMT2-218ENST00000555213 OLFML3Q9NRN5 406 aa11.98□□□□□ -0.49
SHMT2-218ENST00000555213 LRFN2Q9ULH4 789 aa11.98□□□□□ -0.49
SHMT2-218ENST00000555213 COLQQ9Y215 455 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-218ENST00000555213 ADGRA3Q8IWK6 1321 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 PVALEFA0A1B0GWK0 134 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 FRMD3A2A2Y4 597 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 ACKR2O00590 384 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 N4BP3O15049 544 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 STAG3L1P0CL83 205 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 NCKAP1LP55160 1127 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 STK4Q13043 487 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 COASYQ13057 564 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 ZNF658Q5TYW1 1059 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-218ENST00000555213 RASIP1Q5U651 963 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 SLC24A5Q71RS6 500 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 HAUS6Q7Z4H7 955 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 SMYD4Q8IYR2 804 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-218ENST00000555213 HACE1Q8IYU2 909 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 TMEM161BQ8NDZ6 487 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 HPS3Q969F9 1004 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 HVCN1Q96D96 273 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 BICD1Q96G01 975 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 ADPGKQ9BRR6 497 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 ZBED2Q9BTP6 218 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 TRIM6Q9C030 488 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-218ENST00000555213 FZD8Q9H461 694 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 RGS18Q9NS28 235 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 EXOC1Q9NV70 894 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 CXXC1Q9P0U4 656 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-218ENST00000555213 GDAQ9Y2T3 454 aa11.97□□□□□ -0.49
SHMT2-218ENST00000555213 ENPP3O14638 875 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 HNRNPDLO14979 420 aaKnown RBP11.96□□□□□ -0.49
SHMT2-218ENST00000555213 HOXA2O43364 376 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 GCNT3O95395 438 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 IBSPP21815 317 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-218ENST00000555213 PRCPP42785 496 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 DEFB103AP81534 67 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 DSC3Q14574 896 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 TCTN1Q2MV58 587 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 FAM26FQ5R3K3 315 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 ATF7IP2Q5U623 682 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 SLC27A1Q6PCB7 646 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 NPAS4Q8IUM7 802 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 HERC6Q8IVU3 1022 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 ADSSL1Q8N142 457 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 LINC01599Q8WXQ3 324 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 KCNN1Q92952 543 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 TRAIPQ9BWF2 469 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 ST6GALNAC4Q9H4F1 302 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 RMND1Q9NWS8 449 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 EXOC7Q9UPT5 735 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 PCDHB13Q9Y5F0 798 aa11.96□□□□□ -0.49
SHMT2-218ENST00000555213 DNAH12Q6ZR08 3092 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 B4GALT5O43286 388 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 MGEA5O60502 916 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 ARF4P18085 180 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 LIG4P49917 911 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 RAB30Q15771 203 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 AMHR2Q16671 573 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 DCAF4L1Q3SXM0 396 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 COBLL1Q53SF7 1204 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 CT47A1Q5JQC4 288 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 L1TD1Q5T7N2 865 aaKnown RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 ZPBP2Q6X784 338 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.95□□□□□ -0.54e-7■□□□□ 9.3
SHMT2-218ENST00000555213 RNF169Q8NCN4 708 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 KIAA0895Q8NCT3 520 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 RSPH1Q8WYR4 309 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 PGBD4Q96DM1 585 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 CPB2Q96IY4 423 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 FGFBP2Q9BYJ0 223 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 ELAC1Q9H777 363 aaKnown RBP11.95□□□□□ -0.5
SHMT2-218ENST00000555213 FAM105AQ9NUU6 356 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 TMEM161AQ9NX61 479 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 TBC1D7Q9P0N9 293 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 TBX20Q9UMR3 447 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 PCDHB7Q9Y5E2 793 aa11.95□□□□□ -0.5
SHMT2-218ENST00000555213 UBE4BO95155 1302 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 A0A0U1RQF3 1178 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 A0A1B0GUA9 196 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 C9IYK1 514 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 IKBKBO14920 756 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 TLL1O43897 1013 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 UPP2O95045 317 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 GJB5O95377 273 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ERCC5P28715 1186 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-218ENST00000555213 NMT1P30419 496 aaKnown RBP11.94□□□□□ -0.5
SHMT2-218ENST00000555213 HOXA11P31270 313 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-218ENST00000555213 MATR3P43243 847 aaKnown RBP eCLIP11.94□□□□□ -0.5
SHMT2-218ENST00000555213 GTF2BQ00403 316 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 LRIT3Q3SXY7 679 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ZNF568Q3ZCX4 644 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 FAM117BQ6P1L5 589 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ZNF720Q7Z2F6 126 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 MAP4K3Q8IVH8 894 aa11.94□□□□□ -0.5
SHMT2-218ENST00000555213 ABI1Q8IZP0 508 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms