RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 ANKRD40Q6AI12 368 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 SWSAP1Q6NVH7 229 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 STAG2Q8N3U4 1231 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 SRBD1Q8N5C6 995 aaKnown RBP12.26□□□□□ -0.45
SYNE2-208ENST00000553289 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
SYNE2-208ENST00000553289 PARD3BQ8TEW8 1205 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 WRNIP1Q96S55 665 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 PPCSQ9HAB8 311 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 RBAKQ9NYW8 714 aaPredicted RBP12.26□□□□□ -0.45
SYNE2-208ENST00000553289 BFARQ9NZS9 450 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 H3BRJ5 948 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 DUOXA2Q1HG44 320 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 CEP55Q53EZ4 464 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 EFHC2Q5JST6 749 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 NSUN4Q96CB9 384 aaKnown RBP12.26□□□□□ -0.45
SYNE2-208ENST00000553289 MAP3K14Q99558 947 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 AGO2Q9UKV8 859 aaKnown RBP12.26□□□□□ -0.45
SYNE2-208ENST00000553289 HEY1Q9Y5J3 304 aa12.26□□□□□ -0.45
SYNE2-208ENST00000553289 AP3B1O00203 1094 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 HNRNPCL1O60812 293 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 EEF1B2P24534 225 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 HDLBPQ00341 1268 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 DPYDQ12882 1025 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 GPS1Q13098 491 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 SLC18A3Q16572 532 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 PPP1R16BQ96T49 567 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 KRT82Q9NSB4 513 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 FRMD3A2A2Y4 597 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 PP2D1A8MPX8 630 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 VGLL3A8MV65 326 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 NCK2O43639 380 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 SNX2O60749 519 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 GPSM2P81274 684 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 STILQ15468 1287 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 GLYCTKQ8IVS8 523 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 IFT43Q96FT9 208 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ZNF560Q96MR9 790 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 KIF2CQ99661 725 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 TUBE1Q9UJT0 475 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ERCC6L2Q5T890 1561 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 USP27XA6NNY8 438 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 CCDC22O60826 627 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ATP1A1P05023 1023 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 MYL3P08590 195 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ARHGDIAP52565 204 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ARFIP2P53365 341 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 LRIG3Q6UXM1 1119 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 FRA10AC1Q70Z53 315 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 RASGRP2Q7LDG7 609 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 TRIML2Q8N7C3 387 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 CXorf38Q8TB03 319 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ARHGEF1Q92888 912 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 TGS1Q96RS0 853 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 STK33Q9BYT3 514 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 XAB2Q9HCS7 855 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 SUCLA2Q9P2R7 463 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 HPCAL4Q9UM19 191 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 G3BP2Q9UN86 482 aaKnown RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 PTPRUQ92729 1446 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 TMEM247A6NEH6 219 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 IFNA8P32881 189 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ZNF211Q13398 564 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-208ENST00000553289 EDRF1Q3B7T1 1238 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 SLC10A5Q5PT55 438 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 ATL2Q8NHH9 583 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 WDR35Q9P2L0 1181 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 SLC13A4Q9UKG4 626 aa12.25□□□□□ -0.45
SYNE2-208ENST00000553289 SNAP23O00161 211 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 FCER1AP12319 257 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 NFX1Q12986 1120 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 PDIA2Q13087 525 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 FAM182BQ5T319 152 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 FAM47EQ6ZV65 393 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 SYNE4Q8N205 404 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 IGDCC4Q8TDY8 1250 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 RNPC3Q96LT9 517 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 LMCD1Q9NZU5 365 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 L3MBTL1Q9Y468 752 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 PPME1Q9Y570 386 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 ZNF609O15014 1411 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 SNRPFP62306 86 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 IZUMO3Q5VZ72 239 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 LRRC43Q8N309 656 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 PPM1NQ8N819 430 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 VPS11Q9H270 941 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 AGTP01019 485 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 AKR1B1P15121 316 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 MRPS25P82663 173 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 CDC42EP1Q00587 391 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 BYSLQ13895 437 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 MORF4L2Q15014 288 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 SF3B3Q15393 1217 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 TWF2Q6IBS0 349 aaKnown RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 KIRREL3Q8IZU9 778 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 N4BP2L2Q92802 583 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-208ENST00000553289 FOXP3Q9BZS1 431 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 TRPV6Q9H1D0 765 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 TSPOAP1O95153 1857 aa12.24□□□□□ -0.45
SYNE2-208ENST00000553289 NBPF26B4DH59 902 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms