RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CYP2C18P33260 490 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 TCF7P36402 384 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 GUCY1A3Q02108 690 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 APBA1Q02410 837 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 ADCY2Q08462 1091 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 MFSD10Q14728 455 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 E2F5Q15329 346 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 LETM2Q2VYF4 491 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 SPECC1Q5M775 1068 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 KCTD16Q68DU8 428 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 KLHL10Q6JEL2 608 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 NFRKBQ6P4R8 1299 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 MMGT1Q8N4V1 131 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 SH2D3CQ8N5H7 860 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 MYCBPAPQ8TBZ2 947 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 RNPC3Q96LT9 517 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 PCYT2Q99447 389 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 RNPEPQ9H4A4 650 aa8.32□□□□□ -1.08
LIMA1-216ENST00000552909 JPH1Q9HDC5 661 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 TPX2Q9ULW0 747 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 REXO2Q9Y3B8 237 aaKnown RBP8.32□□□□□ -1.08
LIMA1-216ENST00000552909 A0A0C4DFX4 3053 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 ANO9A1A5B4 782 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 ANKRD33BA6NCL7 494 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 CCNT1O60563 726 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 FAM107AO95990 144 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 TIMP1P01033 207 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 SSBP05455 408 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 KRT9P35527 623 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 USP11P51784 963 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 STX17P56962 302 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 GRIN1Q05586 938 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 C6orf89Q6UWU4 347 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 NIPA1Q7RTP0 329 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 KIAA1328Q86T90 577 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 FAM228AQ86W67 206 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 GRAMD1CQ8IYS0 662 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 MAB21L3Q8N8X9 362 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 GIMAP8Q8ND71 665 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 SEPT1Q8WYJ6 367 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 CALR3Q96L12 384 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 LBHD1Q9BQE6 289 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF577Q9BSK1 485 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 BATF3Q9NR55 127 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 ETAA1Q9NY74 926 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 SLC9A2Q9UBY0 812 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 FBXO2Q9UK22 296 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 SRPRBQ9Y5M8 271 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 TET1Q8NFU7 2136 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 PDE2AO00408 941 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 N4BP3O15049 544 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 TLR3O15455 904 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 MSH4O15457 936 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 KRT86O43790 486 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 SLC37A4O43826 429 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 BMP15O95972 392 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 RPSAP08865 295 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 CSF2RAP15509 400 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 MARK3P27448 753 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 CCT6AP40227 531 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 CCL23P55773 120 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 ACTR2P61160 394 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 KRT83P78385 493 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 HABP4Q5JVS0 413 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 EMC10Q5UCC4 262 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 NEK8Q86SG6 692 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 KIRREL3Q8IZU9 778 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 C7orf31Q8N865 590 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 TSEN2Q8NCE0 465 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 SPATA20Q8TB22 786 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 WNT8BQ93098 351 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 CAVIN3Q969G5 261 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 ZIM3Q96PE6 472 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 NOC4LQ9BVI4 516 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 UBE2OQ9C0C9 1292 aaKnown RBP8.31□□□□□ -1.08
LIMA1-216ENST00000552909 HIPK3Q9H422 1215 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 HAUS2Q9NVX0 235 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 GTF2IRD1Q9UHL9 959 aa8.31□□□□□ -1.08
LIMA1-216ENST00000552909 KAT6AQ92794 2004 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 NFASCO94856 1347 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CYP3A7-CYP3A51PA0A087WV96 503 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 E7EVH7 732 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF185O15231 689 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 IDEP14735 1019 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 NR1D1P20393 614 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CYP3A7P24462 503 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CDC25AP30304 524 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 BMP8BP34820 402 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 MDH1P40925 334 aaKnown RBP8.3□□□□□ -1.08
LIMA1-216ENST00000552909 SEC24CP53992 1094 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 ATP2C1P98194 919 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CUL4BQ13620 913 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 C9orf50Q5SZB4 431 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CFAP58Q5T655 872 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF662Q6ZS27 426 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 FAM43BQ6ZT52 329 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-216ENST00000552909 C16orf59Q7L2K0 433 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 SESTD1Q86VW0 696 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 C4orf32Q8N8J7 132 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 DHX38Q92620 1227 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms