RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TNFAIP3P21580 790 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PSMC2P35998 433 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PEX5P50542 639 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CACNB3P54284 484 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 DRG2P55039 364 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 KCNJ2P63252 427 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 AUHQ13825 339 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 LRRC14Q15048 493 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CRY2Q49AN0 593 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CDC42EP5Q6NZY7 148 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 MOXD1Q6UVY6 613 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 C1orf186Q6ZWK4 172 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TBC1D1Q86TI0 1168 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 MYCT1Q8N699 235 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 GIMAP7Q8NHV1 300 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ERMNQ8TAM6 284 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TCP11Q8WWU5 503 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 RPGRQ92834 1020 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 KAT5Q92993 513 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 STAMBPL1Q96FJ0 436 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 BTBD6Q96KE9 485 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 NAP1L3Q99457 506 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 HSD17B14Q9BPX1 270 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 DDX23Q9BUQ8 820 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.84□□□□□ -1.471e-7■■■■■ 115.4
LIMA1-212ENST00000552491 AAASQ9NRG9 546 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 INTS9Q9NV88 658 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 DMAC2Q9NW81 257 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 DONSONQ9NYP3 566 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 APEX2Q9UBZ4 518 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 BAIAP2L1Q9UHR4 511 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CCNL1Q9UK58 526 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 RABGAP1Q9Y3P9 1069 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 L3MBTL1Q9Y468 752 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CD2APQ9Y5K6 639 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ZNFX1Q9P2E3 1918 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 IGLV3-22A0A075B6J6 115 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ANKRD62A6NC57 917 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 C6orf229H3BNL8 230 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TBX3O15119 743 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 RIPK2O43353 540 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 SLITRK3O94933 977 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 UBOX5O94941 541 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 FTLP02792 175 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 VIMP08670 466 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 RPSAP08865 295 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ALAS1P13196 640 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 COMTP21964 271 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CTNNA2P26232 953 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 SREBF1P36956 1147 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 AP3B2Q13367 1082 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 DHX34Q14147 1143 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ITIH4Q14624 930 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 KIF22Q14807 665 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 SIX1Q15475 284 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CLUL1Q15846 466 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CNGA2Q16280 664 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF568Q3ZCX4 644 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 SLFN13Q68D06 897 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC137Q6PK04 289 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 OTUD6AQ7L8S5 288 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TRPM8Q7Z2W7 1104 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 EXOC3L1Q86VI1 746 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 COL23A1Q86Y22 540 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ARHGEF19Q8IW93 802 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC63Q8NA47 563 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 ZSWIM2Q8NEG5 633 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 TBC1D22AQ8WUA7 517 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 DYDC2Q96IM9 177 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PCDHB18PQ96TA0 734 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 WDR18Q9BV38 432 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC134Q9H6E4 229 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 MLXIPLQ9NP71 852 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 AGPAT3Q9NRZ7 376 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PCYOX1Q9UHG3 505 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PTPN22Q9Y2R2 807 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 PFASO15067 1338 aa5.84□□□□□ -1.47
LIMA1-212ENST00000552491 RBBP6Q7Z6E9 1792 aaKnown RBP5.84□□□□□ -1.47
LIMA1-212ENST00000552491 GOLGA6L10A0A0M3HER8 536 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CCDC169A6NNP5 214 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 A8MUI8 341 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 EIF3DO15371 548 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CHMP2AO43633 222 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 SNX3O60493 162 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 FAM13AO94988 1023 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 OAS1P00973 400 aaKnown RBP5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CLTAP09496 248 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 RARAP10276 462 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 SLC8A1P32418 973 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 CIITAP33076 1130 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 NF2P35240 595 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 AFF2P51816 1311 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 NCALDP61601 193 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 JAG1P78504 1218 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MPP2Q14168 576 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MESDQ14696 234 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 LTBP1Q14766 1721 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 SLC15A2Q16348 729 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 LONRF1Q17RB8 773 aa5.83□□□□□ -1.48
LIMA1-212ENST00000552491 MSL1Q68DK7 614 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms