RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 PRKCEQ02156 737 aa13.44□□□□□ -0.26
PTCH1-222ENST00000551425 PALB2Q86YC2 1186 aa13.44□□□□□ -0.26
PTCH1-222ENST00000551425 CELF5Q8N6W0 485 aaKnown RBP13.44□□□□□ -0.26
PTCH1-222ENST00000551425 TMEM87BQ96K49 555 aa13.44□□□□□ -0.26
PTCH1-222ENST00000551425 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.44□□□□□ -0.26
PTCH1-222ENST00000551425 CHST7Q9NS84 486 aa13.44□□□□□ -0.26
PTCH1-222ENST00000551425 FNIP2Q9P278 1114 aa13.44□□□□□ -0.26
PTCH1-222ENST00000551425 SAMM50Q9Y512 469 aa13.44□□□□□ -0.26
PTCH1-222ENST00000551425 IGKV6-21A0A0C4DH24 114 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 SMCO2A6NFE2 343 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 hCG_1984214I3L0E3 225 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 POMCP01189 267 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 NRLP54845 237 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 FZD5Q13467 585 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 ACAP1Q15027 740 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 MAMSTRQ6ZN01 415 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 CATSPER4Q7RTX7 472 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 COLGALT2Q8IYK4 626 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 ZNF713Q8N859 430 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-222ENST00000551425 MBOAT7Q96N66 472 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 SH2B1Q9NRF2 756 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-222ENST00000551425 SEMA4GQ9NTN9 838 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 FAM217BQ9NTX9 383 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-222ENST00000551425 AGPAT5Q9NUQ2 364 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 PRG3Q9Y2Y8 225 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-222ENST00000551425 SLC12A7Q9Y666 1083 aa13.43□□□□□ -0.26
PTCH1-222ENST00000551425 FOXD2O60548 495 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-222ENST00000551425 MCM5P33992 734 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 DNM2P50570 870 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 NUCB1Q02818 461 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 MTAPQ13126 283 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 CSRP2Q16527 193 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 UGCGQ16739 394 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 B4GALNT3Q6L9W6 998 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 ZNF852Q6ZMS4 543 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 PRR23CQ6ZRP0 262 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 TPRG1Q6ZUI0 275 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 GRASPQ7Z6J2 395 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-222ENST00000551425 RUFY2Q8WXA3 655 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 FGF13Q92913 245 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 CEP89Q96ST8 783 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 NIFKQ9BYG3 293 aaKnown RBP13.42□□□□□ -0.26
PTCH1-222ENST00000551425 DISC1Q9NRI5 854 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 BARHL2Q9NY43 387 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 MRPS17Q9Y2R5 130 aaKnown RBP13.42□□□□□ -0.26
PTCH1-222ENST00000551425 FRYQ5TBA9 3013 aa13.42□□□□□ -0.26
PTCH1-222ENST00000551425 MYH9P35579 1960 aaKnown RBP13.41□□□□□ -0.26
PTCH1-222ENST00000551425 CNTNAP5Q8WYK1 1306 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 ANKRD11Q6UB99 2663 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-222ENST00000551425 CEP295Q9C0D2 2601 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 HNRNPA1P09651 372 aaKnown RBP eCLIP13.41□□□□□ -0.26
PTCH1-222ENST00000551425 OR1G1P47890 313 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 CREMQ03060 361 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 DSC1Q08554 894 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 ADCY1Q08828 1119 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 LPAL2Q16609 132 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 RAB11FIP4Q86YS3 637 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 IER2Q9BTL4 223 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 PHF20Q9BVI0 1012 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 UBN1Q9NPG3 1134 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 ZZEF1O43149 2961 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 MYH15Q9Y2K3 1946 aa13.41□□□□□ -0.26
PTCH1-222ENST00000551425 SHISA7A6NL88 538 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 PROS1P07225 676 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 NCLP19338 710 aaKnown RBP13.4□□□□□ -0.26
PTCH1-222ENST00000551425 CIITAP33076 1130 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 NTHL1P78549 312 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 FUT2Q10981 343 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 PPP2R5DQ14738 602 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 USP41Q3LFD5 358 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 PRR16Q569H4 304 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 UBXN11Q5T124 520 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 N4BP2L1Q5TBK1 243 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-222ENST00000551425 JAKMIP3Q5VZ66 844 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 RHPN2Q8IUC4 686 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 ZNF687Q8N1G0 1237 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 MAP4K1Q92918 833 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 LENG9Q96B70 501 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 KXD1Q9BQD3 176 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 CHRDQ9H2X0 955 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 IFT122Q9HBG6 1241 aa13.4□□□□□ -0.26
PTCH1-222ENST00000551425 SUCLA2Q9P2R7 463 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-222ENST00000551425 F8W810 466 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 GDF9O60383 454 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 NR1I2O75469 434 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 STBD1O95210 358 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 HOXB3P14651 431 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-222ENST00000551425 HOXA9P31269 272 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 HOXA11P31270 313 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-222ENST00000551425 SFNP31947 248 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 JAK3P52333 1124 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 MTERF2Q49AM1 385 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 XKR3Q5GH77 459 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 SGMS1Q86VZ5 419 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 MICU3Q86XE3 530 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 GLYCTKQ8IVS8 523 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 CNNM3Q8NE01 707 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 B3GALT6Q96L58 329 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 NLRP4Q96MN2 994 aa13.39□□□□□ -0.27
PTCH1-222ENST00000551425 COLEC11Q9BWP8 271 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms