RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SPATA31D4Q6ZUB0 917 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 MRPL10Q7Z7H8 261 aaKnown RBP14.32□□□□□ -0.12
SCAF11-208ENST00000546534 MAML2Q8IZL2 1156 aaPredicted RBP14.32□□□□□ -0.12
SCAF11-208ENST00000546534 ST13P5Q8NFI4 369 aaPredicted RBP14.32□□□□□ -0.12
SCAF11-208ENST00000546534 GJA10Q969M2 543 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 NLRP4Q96MN2 994 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 FAM193BQ96PV7 902 aaPredicted RBP14.32□□□□□ -0.12
SCAF11-208ENST00000546534 RIT2Q99578 217 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 HERC2P3Q9BVR0 1158 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 FOXQ1Q9C009 403 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 RSAD1Q9HA92 442 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 EPG5Q9HCE0 2579 aa14.32□□□□□ -0.12
SCAF11-208ENST00000546534 GPR179Q6PRD1 2367 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 KLF18A0A0U1RQI7 1052 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 ANHXE9PGG2 379 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 LRRN2O75325 713 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 POMCP01189 267 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 LAMP2P13473 410 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 ADD1P35611 737 aaKnown RBP14.31□□□□□ -0.12
SCAF11-208ENST00000546534 HTR4Q13639 388 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 PPP1R15BQ5SWA1 713 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 LRCH2Q5VUJ6 765 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 KIAA0319Q5VV43 1072 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 ELMSAN1Q6PJG2 1045 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 PJA1Q8NG27 643 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 SLC5A5Q92911 643 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 ESYT1Q9BSJ8 1104 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 TEKT3Q9BXF9 490 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 IFT122Q9HBG6 1241 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 RXFP1Q9HBX9 757 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 SLC2A4RGQ9NR83 387 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 MARCH5Q9NX47 278 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.31□□□□□ -0.12
SCAF11-208ENST00000546534 KANSL3Q9P2N6 904 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 DPP7Q9UHL4 492 aa14.31□□□□□ -0.12
SCAF11-208ENST00000546534 PRG3Q9Y2Y8 225 aaPredicted RBP14.31□□□□□ -0.12
SCAF11-208ENST00000546534 KINO60870 393 aaKnown RBP14.3□□□□□ -0.12
SCAF11-208ENST00000546534 MAFO75444 373 aaPredicted RBP14.3□□□□□ -0.12
SCAF11-208ENST00000546534 PAPLNO95428 1278 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 GLUD2P49448 558 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 UBXN11Q5T124 520 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 MIER3Q7Z3K6 550 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 RNF168Q8IYW5 571 aaPredicted RBP14.3□□□□□ -0.12
SCAF11-208ENST00000546534 CCDC12Q8WUD4 166 aaPredicted RBP14.3□□□□□ -0.12
SCAF11-208ENST00000546534 CCDC136Q96JN2 1154 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 NT5C3AQ9H0P0 336 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 PIDD1Q9HB75 910 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 AGPAT5Q9NUQ2 364 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 SSX2IPQ9Y2D8 614 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 NUMBLQ9Y6R0 609 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 CNTNAP2Q9UHC6 1331 aa14.3□□□□□ -0.12
SCAF11-208ENST00000546534 DDX11L8A8MPP1 907 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 F8W810 466 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 PSMD10O75832 226 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 EFEMP2O95967 443 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 GNA11P29992 359 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 HOXA11P31270 313 aaPredicted RBP14.29□□□□□ -0.12
SCAF11-208ENST00000546534 OR1G1P47890 313 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 STARD6P59095 220 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 GPC5P78333 572 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 DSG2Q14126 1118 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 E2F4Q16254 413 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 GET4Q7L5D6 327 aaPredicted RBP14.29□□□□□ -0.12
SCAF11-208ENST00000546534 DHX32Q7L7V1 743 aaKnown RBP14.29□□□□□ -0.12
SCAF11-208ENST00000546534 PALB2Q86YC2 1186 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 RDM1Q8NG50 284 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 HDAC7Q8WUI4 952 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 RPP25Q9BUL9 199 aaKnown RBP14.29□□□□□ -0.12
SCAF11-208ENST00000546534 PLEKHA4Q9H4M7 779 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 ANO2Q9NQ90 1003 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 NAP1L2Q9ULW6 460 aaPredicted RBP14.29□□□□□ -0.12
SCAF11-208ENST00000546534 WDR81Q562E7 1941 aa14.29□□□□□ -0.12
SCAF11-208ENST00000546534 TGM5O43548 720 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 GAS2O43903 313 aaKnown RBP14.28□□□□□ -0.12
SCAF11-208ENST00000546534 TPRP12270 2363 aaKnown RBP14.28□□□□□ -0.12
SCAF11-208ENST00000546534 USP11P51784 963 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 RCAN1P53805 252 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 DSG1Q02413 1049 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 VARS2Q5ST30 1063 aaKnown RBP14.28□□□□□ -0.12
SCAF11-208ENST00000546534 ANO5Q75V66 913 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 FANCMQ8IYD8 2048 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 COLGALT2Q8IYK4 626 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 DOCK8Q8NF50 2099 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 SHDQ96IW2 340 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 B3GALT6Q96L58 329 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 PRKD2Q9BZL6 878 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 MINDY3Q9H8M7 445 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 ZDHHC7Q9NXF8 308 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 NCDNQ9UBB6 729 aa14.28□□□□□ -0.12
SCAF11-208ENST00000546534 KMT2BQ9UMN6 2715 aaPredicted RBP14.27□□□□□ -0.12
SCAF11-208ENST00000546534 PRPF3O43395 683 aaKnown RBP14.27□□□□□ -0.13
SCAF11-208ENST00000546534 NCLP19338 710 aaKnown RBP14.27□□□□□ -0.13
SCAF11-208ENST00000546534 ATXN1P54253 815 aaKnown RBP14.27□□□□□ -0.13
SCAF11-208ENST00000546534 DSC1Q08554 894 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 ZNF528Q3MIS6 628 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 ADCK5Q3MIX3 580 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 RNF20Q5VTR2 975 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 LILRA6Q6PI73 481 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 PARM1Q6UWI2 310 aa14.27□□□□□ -0.13
SCAF11-208ENST00000546534 B3GNT9Q6UX72 402 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms