RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 ITGA4P13612 1032 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 PLS3P13797 630 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 DNAJB1P25685 340 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 PEX3P56589 373 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 PRPF4BQ13523 1007 aaKnown RBP13.09□□□□□ -0.31
YBX3-217ENST00000546164 ARSHQ5FYA8 562 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 USP49Q70CQ1 688 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 HACE1Q8IYU2 909 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 KRI1Q8N9T8 703 aaKnown RBP13.09□□□□□ -0.31
YBX3-217ENST00000546164 URGCPQ8TCY9 931 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 POF1BQ8WVV4 589 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 RAD54LQ92698 747 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 SYMPKQ92797 1274 aaKnown RBP13.09□□□□□ -0.31
YBX3-217ENST00000546164 EPSTI1Q96J88 318 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 TRIM6Q9C030 488 aaPredicted RBP13.09□□□□□ -0.31
YBX3-217ENST00000546164 PDZD7Q9H5P4 517 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 TMEM134Q9H6X4 195 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 ODF2LQ9ULJ1 636 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 GIT1Q9Y2X7 761 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 KIAA1671Q9BY89 1806 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 NCOR1O75376 2440 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 TTLL13PA6NNM8 815 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 K7ERI5 159 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 EDN1P05305 212 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 DDIT3P35638 169 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 PKP1Q13835 747 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 STK38Q15208 465 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 SKIV2LQ15477 1246 aaKnown RBP13.08□□□□□ -0.32
YBX3-217ENST00000546164 LONRF3Q496Y0 759 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 TCEAL5Q5H9L2 206 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 ATL3Q6DD88 541 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 PDE12Q6L8Q7 609 aaKnown RBP13.08□□□□□ -0.32
YBX3-217ENST00000546164 GPBP1Q86WP2 473 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 THNSL1Q8IYQ7 743 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 SLC39A11Q8N1S5 342 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 RASSF8Q8NHQ8 419 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 MRPS27Q92552 414 aaKnown RBP13.08□□□□□ -0.32
YBX3-217ENST00000546164 LARP4BQ92615 738 aaKnown RBP13.08□□□□□ -0.32
YBX3-217ENST00000546164 HLA-CQ95604 372 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 CLIC6Q96NY7 704 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 NXF3Q9H4D5 531 aaKnown RBP13.08□□□□□ -0.32
YBX3-217ENST00000546164 NRDE2Q9H7Z3 1164 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 KMT5AQ9NQR1 393 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 SPG21Q9NZD8 308 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 STK17AQ9UEE5 414 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 CCDC39Q9UFE4 941 aa13.08□□□□□ -0.32
YBX3-217ENST00000546164 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 CCDC169A6NNP5 214 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 SFI1A8K8P3 1242 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 SPTLC2O15270 562 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 NCK2O43639 380 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 NPTXRO95502 500 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 PRR29P0C7W0 189 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 SCP2P22307 547 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 TXLNAP40222 546 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 ALDH7A1P49419 539 aaKnown RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 AFF1P51825 1210 aaKnown RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 ZNF131P52739 623 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 SMTNP53814 917 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 BCAR1P56945 870 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 MRPS5P82675 430 aaKnown RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 AAK1Q2M2I8 961 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 DCAF4L1Q3SXM0 396 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 SPECC1Q5M775 1068 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 NT5DC1Q5TFE4 455 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 TAS1R3Q7RTX0 852 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 CDR2LQ86X02 465 aaPredicted RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 PABPC5Q96DU9 382 aaKnown RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 REEP2Q9BRK0 252 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 TMEM175Q9BSA9 504 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 TLR9Q9NR96 1032 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 LARSQ9P2J5 1176 aaKnown RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 PUF60Q9UHX1 559 aaKnown RBP13.07□□□□□ -0.32
YBX3-217ENST00000546164 TNFSF13BQ9Y275 285 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 INPP5FQ9Y2H2 1132 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 HES2Q9Y543 173 aa13.07□□□□□ -0.32
YBX3-217ENST00000546164 ARL5CA6NH57 179 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 FSCN2O14926 492 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 B4GALT3O60512 393 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 ZC3H11AO75152 810 aaKnown RBP eCLIP13.06□□□□□ -0.327e-6■■□□□ 13.7
YBX3-217ENST00000546164 BRD1O95696 1058 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 GALTP07902 379 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 IRS1P35568 1242 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 PBX3P40426 434 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 MLH1P40692 756 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 NCKAP1LP55160 1127 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 KRT17Q04695 432 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 RNASELQ05823 741 aaKnown RBP13.06□□□□□ -0.32
YBX3-217ENST00000546164 RAD51AP2Q09MP3 1159 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 MCM6Q14566 821 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 TJAP1Q5JTD0 557 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 ATF7IP2Q5U623 682 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 EEF1DP3Q658K8 133 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 CCDC73Q6ZRK6 1079 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 ZNF280BQ86YH2 543 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 SPRYD3Q8NCJ5 442 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 TMEM161BQ8NDZ6 487 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 GSTCDQ8NEC7 633 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 PPP2R3CQ969Q6 453 aa13.06□□□□□ -0.32
YBX3-217ENST00000546164 ASB2Q96Q27 587 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms