RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PLXNA1Q9UIW2 1896 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 TTC26A0AVF1 554 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ASB14A6NK59 587 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 KIAA0391O15091 583 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 P4HA2O15460 535 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 STRNO43815 780 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 GAS2O43903 313 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 N4BP1O75113 896 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ATG7O95352 703 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 CETPP11597 493 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 XRCC5P13010 732 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 PLS3P13797 630 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 KCNA2P16389 499 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 TAL1P17542 331 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 RFX1P22670 979 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ALDH5A1P51649 535 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 GTF2A2P52657 109 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 CTBSQ01459 385 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 CETN1Q12798 172 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 IRF5Q13568 498 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 XKR3Q5GH77 459 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ODR4Q5SWX8 454 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 FAM160B1Q5W0V3 765 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ABRAQ8N0Z2 381 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 FAM133AQ8N9E0 248 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 NEK11Q8NG66 645 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 PIGOQ8TEQ8 1089 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 OPTNQ96CV9 577 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 WNK4Q96J92 1243 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 FAM167AQ96KS9 214 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 C16orf45Q96MC5 204 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ACCSQ96QU6 501 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 JPH2Q9BR39 696 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 NTPCRQ9BSD7 190 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 TSGA10Q9BZW7 698 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ASCC2Q9H1I8 757 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ELP3Q9H9T3 547 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 ZCCHC17Q9NP64 241 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 TBC1D7Q9P0N9 293 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 CEP72Q9P209 647 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 PLAGL2Q9UPG8 496 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 SIK3Q9Y2K2 1263 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 FRMD4BQ9Y2L6 1034 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 R3HCC1Q9Y3T6 440 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 BZW2Q9Y6E2 419 aaKnown RBP6.78□□□□□ -1.32
SYNE1-239ENST00000545694 DOCK5Q9H7D0 1870 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 MYH10P35580 1976 aa6.78□□□□□ -1.32
SYNE1-239ENST00000545694 MCM3APO60318 1980 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 LRRC37A2A6NM11 1700 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 NPHP3-ACAD11A0A0J9YXS1 232 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 SSU72P8A0A1W2PR75 194 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 EIF3CLB5ME19 914 aaKnown RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 PMM2O15305 246 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 HIP1RO75146 1068 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 AFPP02771 609 aaKnown RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 NR3C1P04150 777 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 SUPT20HL2P0C7V6 817 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 CCDC172P0C7W6 258 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 ZBTB48P10074 688 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 BMP4P12644 408 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 COL8A1P27658 744 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 SLC26A2P50443 739 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 FXR1P51114 621 aaKnown RBP eCLIP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 NCKAP1LP55160 1127 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 GTF2BQ00403 316 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 DMP1Q13316 513 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 DGKZQ13574 1117 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 PRKG1Q13976 671 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 KCTD2Q14681 263 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 LRRC41Q15345 812 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 TREML2Q5T2D2 321 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 ABHD15Q6UXT9 468 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 INTS8Q75QN2 995 aaKnown RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 MTERF4Q7Z6M4 381 aaKnown RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 ANKRD23Q86SG2 305 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 NCAPG2Q86XI2 1143 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 REXO1L1PQ8IX06 675 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 MORC4Q8TE76 937 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 AFAP1L1Q8TED9 768 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 UBE2Q2Q8WVN8 375 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 HPS3Q969F9 1004 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 IFT74Q96LB3 600 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 FIZ1Q96SL8 496 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 EIF3CQ99613 913 aaKnown RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 HAUS4Q9H6D7 363 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 ETNK1Q9HBU6 452 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 NRBP2Q9NSY0 501 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 DMAC2Q9NW81 257 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 MKL2Q9ULH7 1088 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 DOLKQ9UPQ8 538 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 MAFBQ9Y5Q3 323 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 EPN1Q9Y6I3 576 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-239ENST00000545694 UTRNP46939 3433 aa6.77□□□□□ -1.33
SYNE1-239ENST00000545694 ASTN1O14525 1302 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 ATP8B3O60423 1300 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 IGSF9BQ9UPX0 1349 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 PLXNB2O15031 1838 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 DNAJC25-GNG10A0A024R161 153 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 IGKV6D-21A0A0A0MT36 114 aa6.76□□□□□ -1.33
SYNE1-239ENST00000545694 DDX39AO00148 427 aaKnown RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms