RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ARHGEF10LQ9HCE6 1279 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 TUFT1Q9NNX1 390 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 TBK1Q9UHD2 729 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 GJB6O95452 261 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 APBA3O96018 575 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 NF2P35240 595 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 PPP2R5CQ13362 524 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 DENND2CQ68D51 928 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 CC2D2BQ6DHV5 1058 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 HAUS6Q7Z4H7 955 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 TRPC6Q9Y210 931 aa16.2■□□□□ 0.18
USP28-214ENST00000545540 EIF3DO15371 548 aaKnown RBP eCLIP16.19■□□□□ 0.18
USP28-214ENST00000545540 VIMP08670 466 aaKnown RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 CHRNB2P17787 502 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 ZNF653Q96CK0 615 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 FAM114A2Q9NRY5 505 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 FRMPD4Q14CM0 1322 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 RARAP10276 462 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 BCRP11274 1271 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 BYSLQ13895 437 aaKnown RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 ARFGAP2Q8N6H7 521 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 MRRFQ96E11 262 aaKnown RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 THOC1Q96FV9 657 aaKnown RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 ELAC2Q9BQ52 826 aaKnown RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 A0A0A6YYK5 440 aaPredicted RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 TESPA1A2RU30 521 aaPredicted RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 H0YIN7 160 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 MXI1P50539 228 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 LRIG3Q6UXM1 1119 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 KRT27Q7Z3Y8 459 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 CEP57Q86XR8 500 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 PASD1Q8IV76 773 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 TAS1R2Q8TE23 839 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 CPA5Q8WXQ8 436 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 SCLT1Q96NL6 688 aa16.19■□□□□ 0.18
USP28-214ENST00000545540 PDGFDQ9GZP0 370 aaPredicted RBP16.19■□□□□ 0.18
USP28-214ENST00000545540 RPTORQ8N122 1335 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 GTPBP10A4D1E9 387 aaKnown RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 SSR1P43307 286 aaKnown RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 MMP14P50281 582 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 GPC5P78333 572 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 E2F5Q15329 346 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 FAM133BQ5BKY9 247 aaKnown RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 ANKRD42Q8N9B4 389 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 IPO4Q8TEX9 1081 aaKnown RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 HERPUD2Q9BSE4 406 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 RAB17Q9H0T7 212 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 KLHL11Q9NVR0 708 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 GRHL1Q9NZI5 618 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 RGS16O15492 202 aaPredicted RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 VIL1P09327 827 aaKnown RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 MTM1Q13496 603 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 PPP1R7Q15435 360 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 XKR9Q5GH70 373 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 SCARA3Q6AZY7 606 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 NEK9Q8TD19 979 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 EPS8L1Q8TE68 723 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 ZNF341Q9BYN7 854 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 CARD9Q9H257 536 aa16.18■□□□□ 0.18
USP28-214ENST00000545540 ZNF277Q9NRM2 450 aaPredicted RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 LARSQ9P2J5 1176 aaKnown RBP16.18■□□□□ 0.18
USP28-214ENST00000545540 CES2O00748 559 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 CPP00450 1065 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 CAPN12Q6ZSI9 719 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 CACNA2D3Q8IZS8 1091 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 TAAR1Q96RJ0 339 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 RARRES1P49788 294 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 MTMR3Q13615 1198 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 LRRC34Q8IZ02 419 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 ZNF564Q8TBZ8 553 aaPredicted RBP16.17■□□□□ 0.18
USP28-214ENST00000545540 ZSWIM1Q9BR11 485 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 TMX2Q9Y320 296 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 ADSSP30520 456 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 PTGIRP43119 386 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 ZNF131P52739 623 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 BTNL9Q6UXG8 535 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 MICALCLQ6ZW33 695 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 XXYLT1Q8NBI6 393 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 GDAP1Q8TB36 358 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 POMGNT1Q8WZA1 660 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 XPO6Q96QU8 1125 aaKnown RBP16.17■□□□□ 0.18
USP28-214ENST00000545540 MXRA8Q9BRK3 442 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 SLC40A1Q9NP59 571 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 CHST7Q9NS84 486 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 TCEAL9Q9UHQ7 104 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 SERPINA10Q9UK55 444 aa16.17■□□□□ 0.18
USP28-214ENST00000545540 PIK3CDO00329 1044 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 PPFIA2O75334 1257 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 CFHP08603 1231 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 YWHABP31946 246 aaKnown RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 CHKAP35790 457 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 MRPS9P82933 396 aaKnown RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 BIRC3Q13489 604 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 ZKSCAN8Q15776 578 aaPredicted RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 SEZ6Q53EL9 994 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 SPOPLQ6IQ16 392 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 PABPC3Q9H361 631 aaKnown RBP16.16■□□□□ 0.18
USP28-214ENST00000545540 TMOD2Q9NZR1 351 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 NCANO14594 1321 aa16.16■□□□□ 0.18
USP28-214ENST00000545540 PIAS1O75925 651 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms