RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TMEM143Q96AN5 459 aa19.93■□□□□ 0.78
CLSTN3-214ENST00000542663 ZNF707Q96C28 371 aaPredicted RBP19.93■□□□□ 0.78
CLSTN3-214ENST00000542663 RXFP1Q9HBX9 757 aa19.93■□□□□ 0.78
CLSTN3-214ENST00000542663 VAV3Q9UKW4 847 aa19.93■□□□□ 0.78
CLSTN3-214ENST00000542663 CA14Q9ULX7 337 aa19.93■□□□□ 0.78
CLSTN3-214ENST00000542663 VWA8A3KMH1 1905 aa19.93■□□□□ 0.78
CLSTN3-214ENST00000542663 GLUD1P00367 558 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 QARSP47897 775 aaKnown RBP19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 GLUD2P49448 558 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 DSC1Q08554 894 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 LAMTOR4Q0VGL1 99 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 PPP2R5CQ13362 524 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 POTEGQ6S5H5 508 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 CYP26C1Q6V0L0 522 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 DAGLBQ8NCG7 672 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 SLC7A3Q8WY07 619 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 RNF39Q9H2S5 420 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 BMP2KQ9NSY1 1161 aaPredicted RBP19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 MIOSQ9NXC5 875 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 DDX25Q9UHL0 483 aaKnown RBP19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 IPPQ9Y573 584 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 NOTCH4Q99466 2003 aa19.92■□□□□ 0.78
CLSTN3-214ENST00000542663 ARL5CA6NH57 179 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 SPATA31D3P0C874 917 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 OR1G1P47890 313 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 DSG1Q02413 1049 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 SPATA31D4Q6ZUB0 917 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 PSPC1Q8WXF1 523 aaKnown RBP19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 SMG7Q92540 1137 aaKnown RBP19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 STAMQ92783 540 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 CEP170P1Q96L14 293 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 EIF2AQ9BY44 585 aaKnown RBP19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 TBC1D17Q9HA65 648 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 KCNMB3Q9NPA1 279 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 SSX2IPQ9Y2D8 614 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 R4GN57 208 aa19.91■□□□□ 0.78
CLSTN3-214ENST00000542663 OTOGLQ3ZCN5 2332 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 STK25O00506 426 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 LMNAP02545 664 aaKnown RBP19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 SRFP11831 508 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 ITGA4P13612 1032 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 MLH1P40692 756 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 INF2Q27J81 1249 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 RNF149Q8NC42 400 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 GPR152Q8TDT2 470 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 RIN2Q8WYP3 895 aaPredicted RBP19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 B3GALT6Q96L58 329 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 ZFP42Q96MM3 310 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 AIFM3Q96NN9 605 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 GAD1Q99259 594 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 CHST7Q9NS84 486 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 DLGAP2Q9P1A6 1054 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 HES2Q9Y543 173 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 TRIP11Q15643 1979 aa19.9■□□□□ 0.78
CLSTN3-214ENST00000542663 TSPAN1O60635 241 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 P4HBP07237 508 aaKnown RBP19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 RFC5P40937 340 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 SCNN1GP51170 649 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 SSRP1Q08945 709 aaKnown RBP19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 TOB2Q14106 344 aaPredicted RBP19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 EMC2Q15006 297 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 NONOQ15233 471 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 FERMT3Q86UX7 667 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 TRIM22Q8IYM9 498 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 CNNM3Q8NE01 707 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 HDAC7Q8WUI4 952 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 NXPE3Q969Y0 559 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 RMDN1Q96DB5 314 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 NT5C3AQ9H0P0 336 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 SEMA4AQ9H3S1 761 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 UBN1Q9NPG3 1134 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 DPP7Q9UHL4 492 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 PPME1Q9Y570 386 aa19.89■□□□□ 0.77
CLSTN3-214ENST00000542663 ANHXE9PGG2 379 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 ZBTB39O15060 712 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 DEXIO95424 95 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 DCNP07585 359 aaKnown RBP19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 LAMP2P13473 410 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 ELMSAN1Q6PJG2 1045 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 PALB2Q86YC2 1186 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 C4orf19Q8IY42 314 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 EXOC8Q8IYI6 725 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 KCNG4Q8TDN1 519 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 CPB2Q96IY4 423 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 LXNQ9BS40 222 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 GPR62Q9BZJ7 368 aa19.88■□□□□ 0.77
CLSTN3-214ENST00000542663 ASAP2O43150 1006 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 TGM5O43548 720 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 DKC1O60832 514 aaKnown RBP eCLIP19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 ERLIN2O94905 339 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 YWHABP31946 246 aaKnown RBP19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 HTR4Q13639 388 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 SPECC1Q5M775 1068 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 PHLDB3Q6NSJ2 640 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 LILRA6Q6PI73 481 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 GSTCDQ8NEC7 633 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 ST13P5Q8NFI4 369 aaPredicted RBP19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 TCP11Q8WWU5 503 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 HAS1Q92839 578 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 FAM20AQ96MK3 541 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms