RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 DNAJB2P25686 324 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 SNW1Q13573 536 aaKnown RBP20.61■□□□□ 0.89
VPS33A-205ENST00000541169 KYAT1Q16773 422 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 ZNF598Q86UK7 904 aaKnown RBP20.61■□□□□ 0.89
VPS33A-205ENST00000541169 CMTR2Q8IYT2 770 aaKnown RBP20.61■□□□□ 0.89
VPS33A-205ENST00000541169 SP7Q8TDD2 431 aaPredicted RBP20.61■□□□□ 0.89
VPS33A-205ENST00000541169 STAMQ92783 540 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 FIZ1Q96SL8 496 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 ACO2Q99798 780 aaKnown RBP20.61■□□□□ 0.89
VPS33A-205ENST00000541169 PBX4Q9BYU1 374 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 RWDD3Q9Y3V2 267 aa20.61■□□□□ 0.89
VPS33A-205ENST00000541169 B4GALT5O43286 388 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 PIGRP01833 764 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 LIG1P18858 919 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 COASYQ13057 564 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 GLB1LQ6UWU2 654 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 TIFAQ96CG3 184 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 ZNF689Q96CS4 500 aaPredicted RBP20.6■□□□□ 0.89
VPS33A-205ENST00000541169 CPB2Q96IY4 423 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 SAMD11Q96NU1 681 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 MRPL9Q9BYD2 267 aaKnown RBP20.6■□□□□ 0.89
VPS33A-205ENST00000541169 TMEM117Q9H0C3 514 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 PDZD7Q9H5P4 517 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 TMEM206Q9H813 350 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 KANSL3Q9P2N6 904 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 PTPRSQ13332 1948 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 TRIOBPQ9H2D6 2365 aa20.6■□□□□ 0.89
VPS33A-205ENST00000541169 UBE4BO95155 1302 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 EIF3DO15371 548 aaKnown RBP eCLIP20.59■□□□□ 0.89
VPS33A-205ENST00000541169 PRPF40AO75400 957 aaKnown RBP20.59■□□□□ 0.89
VPS33A-205ENST00000541169 MCF2P10911 925 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 HSP90AA2PQ14568 343 aaPredicted RBP20.59■□□□□ 0.89
VPS33A-205ENST00000541169 FAM26FQ5R3K3 315 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 UBXN11Q5T124 520 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 SLFN12LQ6IEE8 588 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 MPZL3Q6UWV2 235 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 MAP4K3Q8IVH8 894 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 BICD1Q96G01 975 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 ACCSQ96QU6 501 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 TCHPQ9BT92 498 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 STRA6Q9BX79 667 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 EXOC1Q9NV70 894 aa20.59■□□□□ 0.89
VPS33A-205ENST00000541169 RANBP2P49792 3224 aaKnown RBP20.59■□□□□ 0.89
VPS33A-205ENST00000541169 HNRNPDLO14979 420 aaKnown RBP20.58■□□□□ 0.89
VPS33A-205ENST00000541169 CLDN3O15551 220 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 PPP1R37O75864 691 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 KIF20AO95235 890 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 SMC2O95347 1197 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 GCNT3O95395 438 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 ITGA4P13612 1032 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 NMT1P30419 496 aaKnown RBP20.58■□□□□ 0.89
VPS33A-205ENST00000541169 LIG4P49917 911 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 SNRPFP62306 86 aaKnown RBP20.58■□□□□ 0.89
VPS33A-205ENST00000541169 EHHADHQ08426 723 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 CUL4BQ13620 913 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 POSTNQ15063 836 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 L1TD1Q5T7N2 865 aaKnown RBP20.58■□□□□ 0.89
VPS33A-205ENST00000541169 NT5DC1Q5TFE4 455 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 TAS1R3Q7RTX0 852 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 RC3H2Q9HBD1 1191 aaKnown RBP20.58■□□□□ 0.89
VPS33A-205ENST00000541169 PTPRHQ9HD43 1115 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 RMND1Q9NWS8 449 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 GIT1Q9Y2X7 761 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 IPPQ9Y573 584 aa20.58■□□□□ 0.89
VPS33A-205ENST00000541169 GRXCR1A8MXD5 290 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 PROZP22891 400 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 RABGGTBP53611 331 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 BTG3Q14201 252 aaPredicted RBP20.57■□□□□ 0.88
VPS33A-205ENST00000541169 KCNB1Q14721 858 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 TPRNQ4KMQ1 711 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 FAM117BQ6P1L5 589 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 FIBCD1Q8N539 461 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 GSDMAQ96QA5 445 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 TARS2Q9BW92 718 aaKnown RBP20.57■□□□□ 0.88
VPS33A-205ENST00000541169 BLZF1Q9H2G9 400 aa20.57■□□□□ 0.88
VPS33A-205ENST00000541169 TOPORSQ9NS56 1045 aaPredicted RBP20.57■□□□□ 0.88
VPS33A-205ENST00000541169 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.57■□□□□ 0.88
VPS33A-205ENST00000541169 GBF1Q92538 1859 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 INPPL1O15357 1258 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 NR1I2O75469 434 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 NPTXRO95502 500 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 RPN1P04843 607 aaKnown RBP20.56■□□□□ 0.88
VPS33A-205ENST00000541169 ATF7P17544 494 aaPredicted RBP20.56■□□□□ 0.88
VPS33A-205ENST00000541169 POU5F1Q01860 360 aaKnown RBP20.56■□□□□ 0.88
VPS33A-205ENST00000541169 DPYDQ12882 1025 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 ZNF568Q3ZCX4 644 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 ZNF697Q5TEC3 545 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 PPP2R2DQ66LE6 453 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 LRRC43Q8N309 656 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 RNF169Q8NCN4 708 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 URGCPQ8TCY9 931 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 EIF2AQ9BY44 585 aaKnown RBP20.56■□□□□ 0.88
VPS33A-205ENST00000541169 RSAD1Q9HA92 442 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 AAASQ9NRG9 546 aa20.56■□□□□ 0.88
VPS33A-205ENST00000541169 CGNQ9P2M7 1197 aaKnown RBP20.56■□□□□ 0.88
VPS33A-205ENST00000541169 KIAA0391O15091 583 aaKnown RBP20.55■□□□□ 0.88
VPS33A-205ENST00000541169 RHOBTB3O94955 611 aa20.55■□□□□ 0.88
VPS33A-205ENST00000541169 CA3P07451 260 aa20.55■□□□□ 0.88
VPS33A-205ENST00000541169 MCL1Q07820 350 aa20.55■□□□□ 0.88
VPS33A-205ENST00000541169 NOLC1Q14978 699 aaKnown RBP eCLIP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms