RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 RNPC3Q96LT9 517 aaKnown RBP19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ADAM2Q99965 735 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 NUP62CLQ9H1M0 184 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 MINDY3Q9H8M7 445 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 LRFN2Q9ULH4 789 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ZMYM2Q9UBW7 1377 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 ARF4P18085 180 aaPredicted RBP19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 LIG4P49917 911 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 STIM1Q13586 685 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 AMHR2Q16671 573 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 KMT5BQ4FZB7 885 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 ATF7IP2Q5U623 682 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 RASIP1Q5U651 963 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 C16orf59Q7L2K0 433 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 OTOP2Q7RTS6 562 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 NPAS4Q8IUM7 802 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 SYCP3Q8IZU3 236 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 FAM161BQ96MY7 647 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 FIZ1Q96SL8 496 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 STRA6Q9BX79 667 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 CLSTN2Q9H4D0 955 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 TMEM161AQ9NX61 479 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 ADGRA3Q8IWK6 1321 aa19.21■□□□□ 0.67
CLSTN3-210ENST00000540931 HNRNPDLO14979 420 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 CLDN3O15551 220 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 KLRC4O43908 158 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 PPP1R37O75864 691 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 HOXA11P31270 313 aaPredicted RBP19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 FAM189BP81408 668 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 POU5F1Q01860 360 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 COBLL1Q53SF7 1204 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 GRAMD1CQ8IYS0 662 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 ZNF507Q8TCN5 953 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 ACO2Q99798 780 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 TCHPQ9BT92 498 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 POLD4Q9HCU8 107 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 PCDHB7Q9Y5E2 793 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 SIP14410 1827 aa19.2■□□□□ 0.66
CLSTN3-210ENST00000540931 SCN5AQ14524 2016 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 C9IYK1 514 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 CSDE1O75534 798 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 LDHAP00338 332 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 MCF2P10911 925 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 NMT1P30419 496 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 WDR5P61964 334 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 PNOCQ13519 176 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 BMT2Q1RMZ1 405 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 ZNF658Q5TYW1 1059 aaPredicted RBP19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 MPZL3Q6UWV2 235 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 HS2ST1Q7LGA3 356 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 TOP1MTQ969P6 601 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 KIFC3Q9BVG8 833 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 TMX1Q9H3N1 280 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 FAM105AQ9NUU6 356 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 KIAA1468Q9P260 1216 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 PCDHA5Q9Y5H7 936 aa19.19■□□□□ 0.66
CLSTN3-210ENST00000540931 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 LETM1O95202 739 aaPredicted RBP19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 ATP2A2P16615 1042 aaKnown RBP19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 MYOCDQ8IZQ8 938 aa19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 VWCEQ96DN2 955 aa19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 TSPAN18Q96SJ8 248 aa19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 GBP3Q9H0R5 595 aa19.18■□□□□ 0.66
CLSTN3-210ENST00000540931 VCANP13611 3396 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 GARTP22102 1010 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 FGFR4P22455 802 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 EPHB4P54760 987 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 SHHQ15465 462 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 KNOP1Q1ED39 458 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 KLHL40Q2TBA0 621 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 ZNF697Q5TEC3 545 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 EPM2AIP1Q7L775 607 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 MRPL10Q7Z7H8 261 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 ECHDC2Q86YB7 292 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 ABI1Q8IZP0 508 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 GUF1Q8N442 669 aaKnown RBP19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 ZBED2Q9BTP6 218 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 KIAA1586Q9HCI6 787 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 SLC39A2Q9NP94 309 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 TOPORSQ9NS56 1045 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 TBC1D7Q9P0N9 293 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 KANSL3Q9P2N6 904 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 INSL6Q9Y581 213 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 PCDHB2Q9Y5E7 798 aa19.17■□□□□ 0.66
CLSTN3-210ENST00000540931 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 PROZP22891 400 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 MATR3P43243 847 aaKnown RBP eCLIP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 YARSP54577 528 aaKnown RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 MCL1Q07820 350 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 MYBPC2Q14324 1141 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 NOLC1Q14978 699 aaKnown RBP eCLIP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 RAB30Q15771 203 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 ZNF568Q3ZCX4 644 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 CT47A1Q5JQC4 288 aaPredicted RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 CCDC183Q5T5S1 534 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 TAS1R3Q7RTX0 852 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 TMEM174Q8WUU8 243 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms