RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 NCLP19338 710 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 OR1G1P47890 313 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 DSG1Q02413 1049 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 TSGA10IPQ3SY00 556 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 VARS2Q5ST30 1063 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 POTEGQ6S5H5 508 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 B3GNT9Q6UX72 402 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 SRGAP1Q7Z6B7 1085 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 PALB2Q86YC2 1186 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 GPR161Q8N6U8 529 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 CNNM3Q8NE01 707 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 PHKBQ93100 1093 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 GJA10Q969M2 543 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 PRKD2Q9BZL6 878 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 FOXQ1Q9C009 403 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 CHST7Q9NS84 486 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 NAP1L2Q9ULW6 460 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 PRG3Q9Y2Y8 225 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 NUMBLQ9Y6R0 609 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 DOCK8Q8NF50 2099 aa13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 KMT2BQ9UMN6 2715 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-209ENST00000539982 TGM5O43548 720 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 LRRN2O75325 713 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 ITGA4P13612 1032 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 GPC5P78333 572 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 Q4G0T1 1027 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 LILRA6Q6PI73 481 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 ANO5Q75V66 913 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 GET4Q7L5D6 327 aaPredicted RBP13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 GPR65Q8IYL9 337 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 BCO2Q9BYV7 579 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 FBXO4Q9UKT5 387 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 COL4A3BPQ9Y5P4 624 aa13.02□□□□□ -0.33
CLSTN3-209ENST00000539982 TPRP12270 2363 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 KANSL1LA0AUZ9 987 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 ARL5CA6NH57 179 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 SPTLC1O15269 473 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 LAMTOR5O43504 91 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 NR1I2O75469 434 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 SRGAP2CP0DJJ0 459 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 ATXN1P54253 815 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 PSMC5P62195 406 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 DSC1Q08554 894 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 ADCK5Q3MIX3 580 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 EXOC8Q8IYI6 725 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 SMG8Q8ND04 991 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 ST13P5Q8NFI4 369 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 CCDC148Q8NFR7 591 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 PRPF31Q8WWY3 499 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 RPP25Q9BUL9 199 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 DDX23Q9BUQ8 820 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 COLEC11Q9BWP8 271 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 MINDY3Q9H8M7 445 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 SPATA6Q9NWH7 488 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 MIOSQ9NXC5 875 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 FNIP2Q9P278 1114 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 NCDNQ9UBB6 729 aa13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 MTCL1Q9Y4B5 1905 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-209ENST00000539982 GPR179Q6PRD1 2367 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 CYP3A7-CYP3A51PA0A087WV96 503 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 ZMYND10O75800 440 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 HMGB1P09429 215 aaKnown RBP13□□□□□ -0.33
CLSTN3-209ENST00000539982 FSHRP23945 695 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 CYP3A7P24462 503 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 FGD1P98174 961 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 AKAP17AQ02040 695 aaKnown RBP13□□□□□ -0.33
CLSTN3-209ENST00000539982 PRKCQQ04759 706 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 LAMTOR4Q0VGL1 99 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 SNW1Q13573 536 aaKnown RBP13□□□□□ -0.33
CLSTN3-209ENST00000539982 KRT32Q14532 448 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 USP41Q3LFD5 358 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 SLC44A4Q53GD3 710 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 PLA2G4FQ68DD2 849 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 PARM1Q6UWI2 310 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 RASEFQ8IZ41 740 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 TBCKQ8TEA7 893 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 ATRIPQ8WXE1 791 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 SLC7A3Q8WY07 619 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 FGF14Q92915 247 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 GAD1Q99259 594 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 OSBPL6Q9BZF3 934 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 RNF39Q9H2S5 420 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 IPPQ9Y573 584 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 PCDHGA2Q9Y5H1 932 aa13□□□□□ -0.33
CLSTN3-209ENST00000539982 FAM170BA6NMN3 283 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 PRR5-ARHGAP8B1AHC4 643 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 F8W810 466 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 ASAP2O43150 1006 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 NPEPPSP55786 919 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 ARHGAP8P85298 464 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 CREMQ03060 361 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 CSTF1Q05048 431 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 GLYCTKQ8IVS8 523 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 ZNF579Q8NAF0 562 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 PSPC1Q8WXF1 523 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 SECISBP2LQ93073 1101 aaKnown RBP12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 TMEM143Q96AN5 459 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 B3GALT6Q96L58 329 aa12.99□□□□□ -0.33
CLSTN3-209ENST00000539982 MBOAT7Q96N66 472 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms