RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SGO2Q562F6 1265 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 TLDC1Q6P9B6 456 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 RNF207Q6ZRF8 634 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 SLC13A5Q86YT5 568 aaPredicted RBP12.08□□□□□ -0.47
SYNE1-237ENST00000539504 P2RX7Q99572 595 aaKnown RBP12.08□□□□□ -0.47
SYNE1-237ENST00000539504 AGPAT3Q9NRZ7 376 aa12.08□□□□□ -0.47
SYNE1-237ENST00000539504 CLDN3O15551 220 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 ATP5DP30049 168 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 CACNB3P54284 484 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 TNIP1Q15025 636 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 CRELD2Q6UXH1 353 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-237ENST00000539504 FAM47EQ6ZV65 393 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 SPICE1Q8N0Z3 855 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 SPDL1Q96EA4 605 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 FAM163AQ96GL9 167 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-237ENST00000539504 OLFML3Q9NRN5 406 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 PCYOX1Q9UHG3 505 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 THRAP3Q9Y2W1 955 aaKnown RBP12.08□□□□□ -0.48
SYNE1-237ENST00000539504 PFASO15067 1338 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 EMSYQ7Z589 1322 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 CNTNAP4Q9C0A0 1308 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 TBX3O15119 743 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 BFSP1Q12934 665 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 KYNUQ16719 465 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 SEPT14Q6ZU15 432 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 ZDHHC14Q8IZN3 488 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 PPM1KQ8N3J5 372 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF653Q96CK0 615 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 TGS1Q96RS0 853 aaKnown RBP12.08□□□□□ -0.48
SYNE1-237ENST00000539504 TRIM7Q9C029 511 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 ACP6Q9NPH0 428 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 ARL2BPQ9Y2Y0 163 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 GAKO14976 1311 aa12.08□□□□□ -0.48
SYNE1-237ENST00000539504 KRT16P08779 473 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 KRT17Q04695 432 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 LRCH2Q5VUJ6 765 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 SRRM1Q8IYB3 904 aaKnown RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 GBP7Q8N8V2 638 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 MKNK1Q9BUB5 465 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 NUP85Q9BW27 656 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 STK24Q9Y6E0 443 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ATP8B3O60423 1300 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 A0A1W2PRG0 241 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 EIF3DO15371 548 aaKnown RBP eCLIP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 CFBP00751 764 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 MYCNP04198 464 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 IL1R1P14778 569 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF131P52739 623 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 RBM5P52756 815 aaKnown RBP eCLIP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 RIPK1Q13546 671 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 TBC1D10BQ4KMP7 808 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 VSIG1Q86XK7 387 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF564Q8TBZ8 553 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 BORCS6Q96GS4 357 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 FAM167BQ9BTA0 163 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 GPR88Q9GZN0 384 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 FOSP01100 380 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 GH1P01241 217 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 RWDD2BP57060 319 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ZNF268Q14587 947 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 GRIPAP1Q4V328 841 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 TRAPPC3LQ5T215 181 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 C11orf63Q6NUN7 778 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 MOXD1Q6UVY6 613 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 INTS8Q75QN2 995 aaKnown RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 PHLDB2Q86SQ0 1253 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 AMIGO3Q86WK7 504 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ARHGEF19Q8IW93 802 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 KAT5Q92993 513 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ROPN1BQ9BZX4 212 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 WNT8AQ9H1J5 351 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 ROPN1Q9HAT0 212 aaPredicted RBP12.07□□□□□ -0.48
SYNE1-237ENST00000539504 PKD2L1Q9P0L9 805 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 POLLQ9UGP5 575 aa12.07□□□□□ -0.48
SYNE1-237ENST00000539504 K7ENM7 598 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CLGNO14967 610 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 SGPL1O95470 568 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CTNNA2P26232 953 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ADCY8P40145 1251 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 MSH2P43246 934 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 Q4G0T1 1027 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 FAM182BQ5T319 152 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 TRIM68Q6AZZ1 485 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 TRMT10CQ7L0Y3 403 aaKnown RBP12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ERICH1Q86X53 443 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ART4Q93070 314 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 LENG9Q96B70 501 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 EBF2Q9HAK2 575 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ETNK1Q9HBU6 452 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 ARHGEF35A5YM69 484 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 DDX39AO00148 427 aaKnown RBP12.06□□□□□ -0.48
SYNE1-237ENST00000539504 GAS7O60861 476 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 GGPS1O95749 300 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CCND1P24385 295 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 SLC8A3P57103 927 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 DLG4P78352 724 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 NFIAQ12857 509 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 KIF22Q14807 665 aa12.06□□□□□ -0.48
SYNE1-237ENST00000539504 CERKLQ49MI3 558 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-237ENST00000539504 MIGA2Q7L4E1 593 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms