RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 SLFN12Q8IYM2 578 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 RASGEF1CQ8N431 466 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 ANKRD13CQ8N6S4 541 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 SYT2Q8N9I0 419 aaPredicted RBP6.25□□□□□ -1.41
VPS33A-203ENST00000536212 LRRC57Q8N9N7 239 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 USP38Q8NB14 1042 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 ACTRT1Q8TDG2 376 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 DCAF4Q8WV16 495 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 CASKIN2Q8WXE0 1202 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 PPM1EQ8WY54 764 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 TBC1D5Q92609 795 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 EDEM1Q92611 657 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 RPGRQ92834 1020 aaKnown RBP6.25□□□□□ -1.41
VPS33A-203ENST00000536212 MS4A14Q96JA4 679 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 ZIM3Q96PE6 472 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 ANO3Q9BYT9 981 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 COA1Q9GZY4 146 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 PSTPIP2Q9H939 334 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 METTL14Q9HCE5 456 aaKnown RBP6.25□□□□□ -1.41
VPS33A-203ENST00000536212 EPB41L5Q9HCM4 733 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 DDX4Q9NQI0 724 aaKnown RBP6.25□□□□□ -1.41
VPS33A-203ENST00000536212 EHD2Q9NZN4 543 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 POLLQ9UGP5 575 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 FAM153AQ9UHL3 310 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 SERPINB13Q9UIV8 391 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 BCS1LQ9Y276 419 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 STXBP5LQ9Y2K9 1186 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 CDK5RAP2Q96SN8 1893 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 QSER1Q2KHR3 1735 aa6.25□□□□□ -1.41
VPS33A-203ENST00000536212 BAZ2BQ9UIF8 2168 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 THSD7AQ9UPZ6 1657 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ZNF233A6NK53 670 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 C1QTNF9BB2RNN3 333 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 EBAG9O00559 213 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 PDXKO00764 312 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SLC16A3O15427 465 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 CALUO43852 315 aaPredicted RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 MED24O75448 989 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 FTCDO95954 541 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 PDGFAP04085 211 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SERPINB2P05120 415 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SPATA31C1P0DKV0 1188 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 PON1P27169 355 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 RPA1P27694 616 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 HOXD13P35453 343 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 MATR3P43243 847 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 NPEPPSP55786 919 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 JAM2P57087 298 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 TNNC1P63316 161 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 PLCB3Q01970 1234 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ADAM9Q13443 819 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 RAPGEF1Q13905 1077 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 MRPL58Q14197 206 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 EPHA7Q15375 998 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 RPS6KA1Q15418 735 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 IFI16Q16666 785 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 KNOP1Q1ED39 458 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 KIAA0753Q2KHM9 967 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 QRICH1Q2TAL8 776 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 Q4G0T1 1027 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 HERC4Q5GLZ8 1057 aaPredicted RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 CFAP58Q5T655 872 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 HHIPL2Q6UWX4 724 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 FAM196AQ6ZSG2 479 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 B4GALNT4Q76KP1 1039 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ZNF571Q7Z3V5 609 aaPredicted RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 TADA2BQ86TJ2 420 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SPATS2Q86XZ4 545 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 NELFCDQ8IXH7 590 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SP8Q8IXZ3 490 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 GJD3Q8N144 294 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 OLIG1Q8TAK6 271 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ETNPPLQ8TBG4 499 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 C7orf43Q8WVR3 580 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 DHX38Q92620 1227 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ALKBH8Q96BT7 664 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 BORCS6Q96GS4 357 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SUSD3Q96L08 255 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 CCDC43Q96MW1 224 aaKnown RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 PSMB7Q99436 277 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 MRIQ9BWK5 157 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 PACSIN1Q9BY11 444 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ISCUQ9H1K1 167 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 TMBIM4Q9HC24 238 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SIX2Q9NPC8 291 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 TIMMDC1Q9NPL8 285 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 NYAP2Q9P242 653 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 SUCLA2Q9P2R7 463 aaPredicted RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 GGA2Q9UJY4 613 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 HDAC9Q9UKV0 1011 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 GREB1LQ9C091 1923 aaPredicted RBP6.24□□□□□ -1.41
VPS33A-203ENST00000536212 BTAF1O14981 1849 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 FOCADQ5VW36 1801 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 LRRC37AA6NMS7 1700 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 LY75O60449 1722 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 LTBP1Q14766 1721 aa6.24□□□□□ -1.41
VPS33A-203ENST00000536212 ATAD5Q96QE3 1844 aa6.23□□□□□ -1.41
VPS33A-203ENST00000536212 KAT6BQ8WYB5 2073 aa6.23□□□□□ -1.41
VPS33A-203ENST00000536212 NPHP3-ACAD11A0A0J9YXS1 232 aa6.23□□□□□ -1.41
VPS33A-203ENST00000536212 TTC36A6NLP5 189 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms