RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PTPN14Q15678 1187 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 TMEM132AQ24JP5 1023 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 MAEAQ7L5Y9 396 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 FBXL6Q8N531 539 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 TDRD5Q8NAT2 981 aaKnown RBP16.36■□□□□ 0.21
VPS28-215ENST00000531924 ERMNQ8TAM6 284 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 ASAP3Q8TDY4 903 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 C8orf76Q96K31 380 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 MTMR9Q96QG7 549 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 GAD1Q99259 594 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 EIF2AQ9BY44 585 aaKnown RBP16.36■□□□□ 0.21
VPS28-215ENST00000531924 POLR3FQ9H1D9 316 aaPredicted RBP16.36■□□□□ 0.21
VPS28-215ENST00000531924 POMKQ9H5K3 350 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 CDH22Q9UJ99 828 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 LIMCH1Q9UPQ0 1083 aa16.36■□□□□ 0.21
VPS28-215ENST00000531924 MUC6Q6W4X9 2439 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 A0A087WWV3 80 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 ARL5CA6NH57 179 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 POTEMA6NI47 508 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 LRRIQ4A6NIV6 560 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 ARL2P36404 184 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 MLH1P40692 756 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 RARRES1P49788 294 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 AFF1P51825 1210 aaKnown RBP16.35■□□□□ 0.21
VPS28-215ENST00000531924 MBTD1Q05BQ5 628 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 MTMR3Q13615 1198 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 CAPSQ13938 189 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 KIAA1841Q6NSI8 718 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 TMC5Q6UXY8 1006 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 ALYREFQ86V81 257 aaKnown RBP16.35■□□□□ 0.21
VPS28-215ENST00000531924 ZBTB8OSQ8IWT0 167 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 KREMEN2Q8NCW0 462 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 SMG8Q8ND04 991 aaKnown RBP16.35■□□□□ 0.21
VPS28-215ENST00000531924 MCPH1Q8NEM0 835 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 SLC22A17Q8WUG5 538 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 PRRX2Q99811 253 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 SFXN1Q9H9B4 322 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 TUFT1Q9NNX1 390 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 HES2Q9Y543 173 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 TRIOO75962 3097 aa16.35■□□□□ 0.21
VPS28-215ENST00000531924 C2CD4DB7Z1M9 353 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 B4GALT3O60512 393 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 GLRA2P23416 452 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 NHLH1Q02575 133 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 IFNLR1Q8IU57 520 aaPredicted RBP16.34■□□□□ 0.21
VPS28-215ENST00000531924 CCDC83Q8IWF9 413 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 UBALD2Q8IYN6 164 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 PLCD3Q8N3E9 789 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 FAM184AQ8NB25 1140 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 ACSF2Q96CM8 615 aaPredicted RBP16.34■□□□□ 0.21
VPS28-215ENST00000531924 KLHL5Q96PQ7 755 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 NACC1Q96RE7 527 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 COLEC11Q9BWP8 271 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 VN1R3Q9BXE9 311 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 NFKBIZQ9BYH8 718 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 RNF39Q9H2S5 420 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 PARP2Q9UGN5 583 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 DPP7Q9UHL4 492 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 GIT1Q9Y2X7 761 aa16.34■□□□□ 0.21
VPS28-215ENST00000531924 ARHGEF35A5YM69 484 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 WNT7AO00755 349 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 NPTXRO95502 500 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 SOD2P04179 222 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 ADH1AP07327 375 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 CNPP09543 421 aaKnown RBP16.33■□□□□ 0.2
VPS28-215ENST00000531924 ARF4P18085 180 aaPredicted RBP16.33■□□□□ 0.2
VPS28-215ENST00000531924 SCNN1GP51170 649 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 KANK3Q6NY19 840 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 SLC27A1Q6PCB7 646 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 ZFP42Q96MM3 310 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 LLPHQ9BRT6 129 aaKnown RBP16.33■□□□□ 0.2
VPS28-215ENST00000531924 TMEM60Q9H2L4 133 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 NXF3Q9H4D5 531 aaKnown RBP16.33■□□□□ 0.2
VPS28-215ENST00000531924 SORCS3Q9UPU3 1222 aa16.33■□□□□ 0.2
VPS28-215ENST00000531924 OR52Z1P0C646 297 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 AKAP5P24588 427 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 GLUD2P49448 558 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 RBM25P49756 843 aaKnown RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 PTPN5P54829 565 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 HMGN5P82970 282 aaKnown RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 ORC2Q13416 577 aaPredicted RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 ZNF174Q15697 407 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 CCDC149Q6ZUS6 474 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 OTOP3Q7RTS5 596 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 CATSPER3Q86XQ3 398 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 COLGALT2Q8IYK4 626 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 RPS6KC1Q96S38 1066 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 POLR3CQ9BUI4 534 aaPredicted RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 HERC2P3Q9BVR0 1158 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 C2orf40Q9H1Z8 148 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 FOXP1Q9H334 677 aaPredicted RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 GPRC5CQ9NQ84 441 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 PRMT7Q9NVM4 692 aaPredicted RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 LIMD1Q9UGP4 676 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 NOL7Q9UMY1 257 aaKnown RBP16.32■□□□□ 0.2
VPS28-215ENST00000531924 USTQ9Y2C2 406 aa16.32■□□□□ 0.2
VPS28-215ENST00000531924 B4GALT5O43286 388 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 SEC24BO95487 1268 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 SPATA31C1P0DKV0 1188 aa16.31■□□□□ 0.2
VPS28-215ENST00000531924 LIG1P18858 919 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms