RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MAP7D2Q96T17 732 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 RPP25Q9BUL9 199 aaKnown RBP9.34□□□□□ -0.91
CD44-232ENST00000531118 FAM126AQ9BYI3 521 aaPredicted RBP9.34□□□□□ -0.91
CD44-232ENST00000531118 GBP3Q9H0R5 595 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 MRPL17Q9NRX2 175 aaKnown RBP9.34□□□□□ -0.91
CD44-232ENST00000531118 KCNH7Q9NS40 1196 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 STK39Q9UEW8 545 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 AKT3Q9Y243 479 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 INPP5FQ9Y2H2 1132 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 SLC27A5Q9Y2P5 690 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 NOTCH4Q99466 2003 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 SMG1Q96Q15 3661 aaKnown RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 TICRRQ7Z2Z1 1910 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 C1QTNF9BB2RNN3 333 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 C2CD2LO14523 706 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 TEX28O15482 410 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 SOD2P04179 222 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 C1QTNF9P0C862 333 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 MYBP10242 640 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 EIF4BP23588 611 aaKnown RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 RPS9P46781 194 aaKnown RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 CLK2P49760 499 aaKnown RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 NLRP11P59045 1033 aaKnown RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 CSRP2Q16527 193 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 IMMTQ16891 758 aaKnown RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 NOMO2Q5JPE7 1267 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 IL31Q6EBC2 164 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 PDXDC2PQ6P474 469 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 PARM1Q6UWI2 310 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 PRR23BQ6ZRT6 265 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 TPRG1Q6ZUI0 275 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 TICAM2Q86XR7 235 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 SCUBE3Q8IX30 993 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 METTL13Q8N6R0 699 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 PHKBQ93100 1093 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 CLDN23Q96B33 292 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 ZNF668Q96K58 619 aaPredicted RBP9.33□□□□□ -0.92
CD44-232ENST00000531118 MXRA8Q9BRK3 442 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 SPZ1Q9BXG8 430 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 ADAMTS10Q9H324 1103 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 SENP2Q9HC62 589 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 ZNF302Q9NR11 478 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 DACT1Q9NYF0 836 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.33□□□□□ -0.92
CD44-232ENST00000531118 DPP7Q9UHL4 492 aa9.33□□□□□ -0.92
CD44-232ENST00000531118 PDCD11Q14690 1871 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 SPDYE3A6NKU9 549 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 MEIS3P2A8K0S8 358 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 DDX39AO00148 427 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 DARSP14868 501 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 ATP4AP20648 1035 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 CD72P21854 359 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 PHKA2P46019 1235 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 GPC3P51654 580 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 AK2P54819 239 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 RNASELQ05823 741 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 TROAPQ12815 778 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 MTAPQ13126 283 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 SLC44A4Q53GD3 710 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 ZBTB41Q5SVQ8 909 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 GLB1LQ6UWU2 654 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 ABHD15Q6UXT9 468 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 LRRC71Q8N4P6 559 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 RRP36Q96EU6 259 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 SCLT1Q96NL6 688 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 RPS6KC1Q96S38 1066 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 MYL10Q9BUA6 226 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 PIDD1Q9HB75 910 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 AGO4Q9HCK5 861 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 ZDHHC7Q9NXF8 308 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 SEC63Q9UGP8 760 aaKnown RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 PCDHA6Q9UN73 950 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 PCDHA8Q9Y5H6 950 aa9.32□□□□□ -0.92
CD44-232ENST00000531118 ZFP37Q9Y6Q3 630 aaPredicted RBP9.32□□□□□ -0.92
CD44-232ENST00000531118 MAST4O15021 2626 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 NDUFV2P19404 249 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 FSHRP23945 695 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 KIF5BP33176 963 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 GLUD2P49448 558 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 LIMK1P53667 647 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 PDE1AP54750 535 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 PFKPQ01813 784 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 LONRF3Q496Y0 759 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 MTSS1LQ765P7 747 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 ZNF280BQ86YH2 543 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 CELF5Q8N6W0 485 aaKnown RBP9.31□□□□□ -0.92
CD44-232ENST00000531118 DSCC1Q9BVC3 393 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 NT5C3AQ9H0P0 336 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 PSTPIP2Q9H939 334 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 MARCH5Q9NX47 278 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 CDH7Q9ULB5 785 aa9.31□□□□□ -0.92
CD44-232ENST00000531118 NCAM2O15394 837 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 FOXD2O60548 495 aaPredicted RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 OFD1O75665 1012 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 RAB27AP51159 221 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 NRLP54845 237 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 GUCA2AQ02747 115 aa9.3□□□□□ -0.92
CD44-232ENST00000531118 AASDHQ4L235 1098 aaPredicted RBP9.3□□□□□ -0.92
CD44-232ENST00000531118 TWF2Q6IBS0 349 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms