RNA–Protein interactions for RNA: ENST00000525435.1

CCS-202, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-202ENST00000525435 B4GALT5O43286 388 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 PRPF40AO75400 957 aaKnown RBP13.59□□□□□ -0.23
CCS-202ENST00000525435 TOM1L1O75674 476 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 PPP1R37O75864 691 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 UPP2O95045 317 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 EHHADHQ08426 723 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 COASYQ13057 564 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 CUL4BQ13620 913 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 DCAF4L1Q3SXM0 396 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 SP7Q8TDD2 431 aaPredicted RBP13.59□□□□□ -0.23
CCS-202ENST00000525435 CCDC47Q96A33 483 aaKnown RBP13.59□□□□□ -0.23
CCS-202ENST00000525435 YME1L1Q96TA2 773 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 EXOC7Q9UPT5 735 aa13.59□□□□□ -0.23
CCS-202ENST00000525435 KINO60870 393 aaKnown RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 PROZP22891 400 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 DNAJB2P25686 324 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 NMT1P30419 496 aaKnown RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 RABGGTBP53611 331 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 KYAT1Q16773 422 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 TMEM132AQ24JP5 1023 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 SLFN12LQ6IEE8 588 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 MAP4K3Q8IVH8 894 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 CMTR2Q8IYT2 770 aaKnown RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 TIFAQ96CG3 184 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 CPB2Q96IY4 423 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 TARS2Q9BW92 718 aaKnown RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 GTPBP4Q9BZE4 634 aaKnown RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 TRIM6Q9C030 488 aaPredicted RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 TMEM117Q9H0C3 514 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 PDZD7Q9H5P4 517 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 RC3H2Q9HBD1 1191 aaKnown RBP13.58□□□□□ -0.24
CCS-202ENST00000525435 KANSL3Q9P2N6 904 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 LAMA3Q16787 3333 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 ZMYM2Q9UBW7 1377 aa13.58□□□□□ -0.24
CCS-202ENST00000525435 CARNS1A5YM72 827 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 INPPL1O15357 1258 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 EIF3DO15371 548 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCS-202ENST00000525435 CLDN3O15551 220 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 GADD45BO75293 160 aaPredicted RBP13.57□□□□□ -0.24
CCS-202ENST00000525435 NR1I2O75469 434 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 MCF2P10911 925 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 ATF7P17544 494 aaPredicted RBP13.57□□□□□ -0.24
CCS-202ENST00000525435 LIG1P18858 919 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 SNRPFP62306 86 aaKnown RBP13.57□□□□□ -0.24
CCS-202ENST00000525435 DPYDQ12882 1025 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 KCNB1Q14721 858 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 POSTNQ15063 836 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 TPRNQ4KMQ1 711 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 FAM26FQ5R3K3 315 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 L1TD1Q5T7N2 865 aaKnown RBP13.57□□□□□ -0.24
CCS-202ENST00000525435 GLB1LQ6UWU2 654 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 MPZL3Q6UWV2 235 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 ABI1Q8IZP0 508 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 SMG8Q8ND04 991 aaKnown RBP13.57□□□□□ -0.24
CCS-202ENST00000525435 SAMD11Q96NU1 681 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 ACCSQ96QU6 501 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 TCHPQ9BT92 498 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 EIF2AQ9BY44 585 aaKnown RBP13.57□□□□□ -0.24
CCS-202ENST00000525435 BLZF1Q9H2G9 400 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 TMEM206Q9H813 350 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 SLC28A3Q9HAS3 691 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 GIT1Q9Y2X7 761 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 RWDD3Q9Y3V2 267 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 IPPQ9Y573 584 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 STYXL1Q9Y6J8 313 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 SIP14410 1827 aa13.57□□□□□ -0.24
CCS-202ENST00000525435 TTLL13PA6NNM8 815 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 HNRNPDLO14979 420 aaKnown RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 KLRC4O43908 158 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 OFD1O75665 1012 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 SMC2O95347 1197 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 GCNT3O95395 438 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 RPN1P04843 607 aaKnown RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 ITGA4P13612 1032 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 PBX2P40425 430 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 LIG4P49917 911 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 POU5F1Q01860 360 aaKnown RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 MCL1Q07820 350 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 BTG3Q14201 252 aaPredicted RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 ZC2HC1CQ53FD0 456 aaPredicted RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 FAM117BQ6P1L5 589 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 EPM2AIP1Q7L775 607 aaPredicted RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 TMCO2Q7Z6W1 182 aaPredicted RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 GRAMD1CQ8IYS0 662 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 FIBCD1Q8N539 461 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 SPATA20Q8TB22 786 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 ZNF507Q8TCN5 953 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 CLP1Q92989 425 aaKnown RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 BICD1Q96G01 975 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 GSDMAQ96QA5 445 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 MRPL9Q9BYD2 267 aaKnown RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 RNF19AQ9NV58 838 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 EXOC1Q9NV70 894 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 YBX2Q9Y2T7 364 aaKnown RBP13.56□□□□□ -0.24
CCS-202ENST00000525435 UBE4BO95155 1302 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 MICAL3Q7RTP6 2002 aa13.56□□□□□ -0.24
CCS-202ENST00000525435 A0A0B4J269 797 aa13.55□□□□□ -0.24
CCS-202ENST00000525435 SOX1O00570 391 aaPredicted RBP13.55□□□□□ -0.24
CCS-202ENST00000525435 ABLIM1O14639 778 aa13.55□□□□□ -0.24
CCS-202ENST00000525435 RHOBTB3O94955 611 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms