RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 TTC38Q5R3I4 469 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 PIK3R6Q5UE93 754 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 RD3Q7Z3Z2 195 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 NME9Q86XW9 330 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 HOMER1Q86YM7 354 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 ARHGEF19Q8IW93 802 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 GLB1L3Q8NCI6 653 aaPredicted RBP4.4□□□□□ -1.71
CSMD3-209ENST00000519485 OR52N2Q8NGI0 321 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 APPBP2Q92624 585 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 NELL1Q92832 810 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 SIN3AQ96ST3 1273 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 R3HDMLQ9H3Y0 253 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 SERHL2Q9H4I8 314 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 ACSS2Q9NR19 701 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 TMEM260Q9NX78 707 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 ISY1Q9ULR0 285 aaKnown RBP4.4□□□□□ -1.71
CSMD3-209ENST00000519485 FYCO1Q9BQS8 1478 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 CFAP43Q8NDM7 1665 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 EFCAB5A4FU69 1503 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 INSRP06213 1382 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 PHLDB1Q86UU1 1377 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 POLR1AO95602 1720 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 AHRRA9YTQ3 701 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 MAFGO15525 162 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 HOXA3O43365 443 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 GLRX3O76003 335 aaKnown RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 SCAF4O95104 1147 aaKnown RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 CYP17A1P05093 508 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 JMJD7P0C870 316 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 NCLP19338 710 aaKnown RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 PTMSP20962 102 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 AVPR1BP47901 424 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 KIF11P52732 1056 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 IRX6P78412 446 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 PABPC4Q13310 644 aaKnown RBP eCLIP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 ZNF460Q14592 562 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 ZNF174Q15697 407 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 MAN2A1Q16706 1144 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 C21orf62-AS1Q17RA5 79 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 CFAP100Q494V2 611 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 PRR16Q569H4 304 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 DOK3Q7L591 496 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 KANSL1Q7Z3B3 1105 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 FAM9BQ8IZU0 186 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 SYNPOQ8N3V7 929 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 PPP1R14CQ8TAE6 165 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 LINC00476Q8WZB0 136 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 RPGRQ92834 1020 aaKnown RBP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 PKNOX2Q96KN3 472 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 PCIF1Q9H4Z3 704 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 FANCLQ9NW38 375 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 SYNPO2Q9UMS6 1093 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.39□□□□□ -1.71
CSMD3-209ENST00000519485 ABCA5Q8WWZ7 1642 aa4.39□□□□□ -1.71
CSMD3-209ENST00000519485 AKNAQ7Z591 1439 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 A0A0A6YYJ9 748 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 PTPDC1A2A3K4 754 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 H7C1D1 291 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 ZNF185O15231 689 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 DNAJC8O75937 253 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 STC2O76061 302 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 HSP90AA1P07900 732 aaKnown RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 HSPA5P11021 654 aaKnown RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 SDSP20132 328 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 BMPR1AP36894 532 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 NEK4P51957 841 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 WNT3AP56704 352 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 BLOC1S1P78537 153 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 RALBP1Q15311 655 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 EPHA7Q15375 998 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 VPS72Q15906 364 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 CCDC62Q6P9F0 684 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 FAM83AQ86UY5 434 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 FAM98AQ8NCA5 519 aaKnown RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 CHST14Q8NCH0 376 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 SUPT20HQ8NEM7 779 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 RNPC3Q96LT9 517 aaKnown RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 DCLRE1CQ96SD1 692 aaKnown RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 NDC1Q9BTX1 674 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 ZNF768Q9H5H4 540 aaKnown RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 MAGEC2Q9UBF1 373 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 DNAI1Q9UI46 699 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 ZKSCAN5Q9Y2L8 839 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 INSL6Q9Y581 213 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 CD2APQ9Y5K6 639 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 EPN1Q9Y6I3 576 aaPredicted RBP4.38□□□□□ -1.71
CSMD3-209ENST00000519485 CCDC7Q96M83 1385 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 NCOA1Q15788 1441 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 MIA2Q96PC5 1412 aa4.38□□□□□ -1.71
CSMD3-209ENST00000519485 RNASET2O00584 256 aaKnown RBP4.37□□□□□ -1.71
CSMD3-209ENST00000519485 DVL2O14641 736 aa4.37□□□□□ -1.71
CSMD3-209ENST00000519485 CDC45O75419 566 aa4.37□□□□□ -1.71
CSMD3-209ENST00000519485 FSBPO95073 299 aa4.37□□□□□ -1.71
CSMD3-209ENST00000519485 ERBB2P04626 1255 aa4.37□□□□□ -1.71
CSMD3-209ENST00000519485 HNRNPLP14866 589 aaKnown RBP eCLIP4.37□□□□□ -1.71
CSMD3-209ENST00000519485 HK1P19367 917 aa4.37□□□□□ -1.71
CSMD3-209ENST00000519485 MYBPC3Q14896 1274 aa4.37□□□□□ -1.71
CSMD3-209ENST00000519485 CDCA2Q69YH5 1023 aaPredicted RBP4.37□□□□□ -1.71
CSMD3-209ENST00000519485 CNNM4Q6P4Q7 775 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms