RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 DYTNA2CJ06 578 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM86C2PA6NEL3 165 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRAMEF25A6NGN4 478 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 WASH4PA8MWX3 477 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRR5-ARHGAP8B1AHC4 643 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 F5H423 210 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 K7ENM7 598 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MASP2O00187 686 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNASET2O00584 256 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GABRDO14764 452 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM24O15164 1050 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PMM2O15305 246 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TEX33O43247 280 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRPF3O43395 683 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FIBPO43427 364 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CBFA2T2O43439 604 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SUSD5O60279 629 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 OPA1O60313 960 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PIP5K1CO60331 668 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CTNND1O60716 968 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP12O75317 370 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 VAMP4O75379 141 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ULK1O75385 1050 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TADA3O75528 432 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNASEH2AO75792 299 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CNOT4O95628 575 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 LTFP02788 710 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 HRGP04196 525 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERBB2P04626 1255 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CYP17A1P05093 508 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCG5P05408 212 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 EPHX1P07099 455 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 C1SP09871 688 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TGFB3P10600 412 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RBP3P10745 1247 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PYGMP11217 842 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FGFR1P11362 822 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PABPC1P11940 636 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 IFNGR1P15260 489 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAHP16930 419 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZKSCAN1P17029 563 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 HSPA6P17066 643 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 BPIP17213 487 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SDSP20132 328 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 BMP5P22003 454 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 LPOP22079 712 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCP2P22307 547 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTGS1P23219 599 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 AKAP5P24588 427 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRK2P25098 689 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDC25AP30304 524 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLR2BP30876 1174 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTGER1P34995 402 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRK3P35626 688 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 IGFALSP35858 605 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 BCL6P41182 706 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CTSKP43235 329 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRK6P43250 576 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RECQLP46063 649 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RXRGP48443 463 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCT4P50991 539 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GALK1P51570 392 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RENBPP51606 427 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEK3P51956 506 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 WNT3AP56704 352 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 BCAR1P56945 870 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GEMIN4P57678 1058 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NANOS3P60323 173 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR85P60893 370 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SUMO1P63165 101 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GABREP78334 506 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 APBA1Q02410 837 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NUCB1Q02818 461 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 STRN3Q13033 797 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPFIA1Q13136 1202 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 STK3Q13188 491 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLF1Q13351 362 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCIRG1Q13488 830 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SNW1Q13573 536 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NFYCQ13952 458 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 STAT4Q14765 748 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIF22Q14807 665 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TAF11Q15544 211 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ELAVL1Q15717 326 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ELF2Q15723 593 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR19Q15760 415 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDC37Q16543 378 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DGKDQ16760 1214 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC142Q17RM4 750 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC4A8Q2Y0W8 1093 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC10A6Q3KNW5 377 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 INAVAQ3KP66 663 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALDH1L2Q3SY69 923 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CFAP100Q494V2 611 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GLIPR1L2Q4G1C9 344 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARHGAP29Q52LW3 1261 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC178Q5BJE1 867 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM61Q5EBN2 209 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DCAF17Q5H9S7 520 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FIGNQ5HY92 759 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms