RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SPOPLQ6IQ16 392 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 SIX6OS1Q8N1H7 587 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 SYT2Q8N9I0 419 aaPredicted RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 TGS1Q96RS0 853 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 INPP5FQ9Y2H2 1132 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 GRB10Q13322 594 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 TFDP2Q14188 446 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 DALRD3Q5D0E6 543 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 FBXW10Q5XX13 1052 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 RHPN2Q8IUC4 686 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 KCNV2Q8TDN2 545 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 PPWD1Q96BP3 646 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 TUFT1Q9NNX1 390 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 SLC9A2Q9UBY0 812 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 USP32Q8NFA0 1604 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 TECPR2O15040 1411 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 SMIM24O75264 130 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 CALB1P05937 261 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 RPA1P27694 616 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 DHX34Q14147 1143 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 INTS5Q6P9B9 1019 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 CATSPER3Q86XQ3 398 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 EXOC8Q8IYI6 725 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 CPA5Q8WXQ8 436 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 ALG13Q9NP73 1137 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 EIF3HO15372 352 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP53-209ENST00000514665 FXR2P51116 673 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP53-209ENST00000514665 DEPDC1BQ8WUY9 529 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 MTRQ99707 1265 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 ZNF302Q9NR11 478 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 KBTBD4Q9NVX7 518 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 NYAP2Q9P242 653 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 L1RE1Q9UN81 338 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 ALG6Q9Y672 507 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 RSPH10B2B2RC85 870 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 GYG2O15488 501 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 MEFVO15553 781 aaPredicted RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 RSPH10BP0C881 870 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 NPEPPSP55786 919 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 PRPSAP1Q14558 356 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 SYCP2LQ5T4T6 812 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 TMCO4Q5TGY1 634 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 CDKAL1Q5VV42 579 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 PLA2G4FQ68DD2 849 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 ZC3H18Q86VM9 953 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 LRRC37BQ96QE4 947 aa13.5□□□□□ -0.25
USP53-209ENST00000514665 NOP53Q9NZM5 478 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 DBR1Q9UK59 544 aaKnown RBP13.5□□□□□ -0.25
USP53-209ENST00000514665 PXDNQ92626 1479 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 MEGF6O75095 1541 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 RTN2O75298 545 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 RXRBP28702 533 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 ERFP50548 548 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 BAATQ14032 418 aaPredicted RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 JADE1Q6IE81 842 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 GPD1LQ8N335 351 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 FAM217BQ9NTX9 383 aaPredicted RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 SUGT1Q9Y2Z0 365 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 CYP11B2P19099 503 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 LSP1P33241 339 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 BYSLQ13895 437 aaKnown RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 EZH2Q15910 746 aaKnown RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 GPR162Q16538 588 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 SPOUT1Q5T280 376 aaKnown RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 KLHDC7AQ5VTJ3 777 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 RPAINQ86UA6 219 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 MYLK4Q86YV6 388 aaPredicted RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 HNRNPLLQ8WVV9 542 aaKnown RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 KLC2Q9H0B6 622 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 TCP11X1B4DZS4 312 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 GOLGA8RI6L899 631 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 KITP10721 976 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 RFX1P22670 979 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 ARSEP51690 589 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 PMS1P54277 932 aaKnown RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 HMGCS2P54868 508 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 COG7P83436 770 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 CAV1Q03135 178 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 SEPT6Q14141 434 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 DNAAF5Q86Y56 855 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 USP38Q8NB14 1042 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 TTC13Q8NBP0 860 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 FBXO41Q8TF61 875 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 ZNF473Q8WTR7 871 aaKnown RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 TMEM143Q96AN5 459 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 SNF8Q96H20 258 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 LBHD1Q9BQE6 289 aaPredicted RBP13.49□□□□□ -0.25
USP53-209ENST00000514665 HOXC10Q9NYD6 342 aa13.49□□□□□ -0.25
USP53-209ENST00000514665 A0A1W2PQJ5 194 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 DCTN3O75935 186 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 NFIAQ12857 509 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 FAM193BQ96PV7 902 aaPredicted RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 CRAMP1Q96RY5 1269 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 NAGPAQ9UK23 515 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 PPP1R9AQ9ULJ8 1098 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 ESYT2A0FGR8 921 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 LRRIQ3A6PVS8 624 aaPredicted RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 SMIM22K7EJ46 135 aa13.48□□□□□ -0.25
USP53-209ENST00000514665 SLC16A3O15427 465 aaKnown RBP13.48□□□□□ -0.25
USP53-209ENST00000514665 SKIP12755 728 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms