RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 RPL13P26373 211 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 SLC12A3P55017 1021 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 TRAF1Q13077 416 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 ITIH4Q14624 930 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 DACT2Q5SW24 774 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 ZNF746Q6NUN9 644 aaPredicted RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 SFR1Q86XK3 245 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 SLC35G2Q8TBE7 412 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 NAF1Q96HR8 494 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 KCTD10Q9H3F6 313 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 TMOD2Q9NZR1 351 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 C5orf60A6NFR6 353 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 TARSP26639 723 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 KNOP1Q1ED39 458 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 Q4G0T1 1027 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 TATDN1Q6P1N9 297 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 SYT2Q8N9I0 419 aaPredicted RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 GMCL1P1Q8NEA9 526 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 GMCL1Q96IK5 515 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 MBOAT7Q96N66 472 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 RAB3IPQ96QF0 476 aaPredicted RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 NUDCD1Q96RS6 583 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 BHMT2Q9H2M3 363 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 SERPINA10Q9UK55 444 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 PCDHA2Q9Y5H9 948 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 FOCADQ5VW36 1801 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 MYH7BA7E2Y1 1941 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 THAP12O43422 761 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 SNUPNO95149 360 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 APBA3O96018 575 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 GSTA1P08263 222 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 HSPA1LP34931 641 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 SREBF1P36956 1147 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 PSMC6P62333 389 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 ARSHQ5FYA8 562 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 UBAP2Q5T6F2 1119 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 FAM43BQ6ZT52 329 aaPredicted RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 SH3BP5LQ7L8J4 393 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 ETNPPLQ8TBG4 499 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 MAGEC3Q8TD91 643 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 RNF25Q96BH1 459 aaPredicted RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 CSRNP1Q96S65 589 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 REEP2Q9BRK0 252 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 CTNNAL1Q9UBT7 734 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 PPP1R9AQ9ULJ8 1098 aa10.35□□□□□ -0.75
VCAN-210ENST00000513960 G3BP2Q9UN86 482 aaKnown RBP10.35□□□□□ -0.75
VCAN-210ENST00000513960 FAM86B1E9PN63 330 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 FAM86B2P0C5J1 330 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 CREB1P16220 341 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 CYP2J2P51589 502 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 MARSP56192 900 aaKnown RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 FKBP1AP62942 108 aaKnown RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 GIT2Q14161 759 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 CYP4F22Q6NT55 531 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 TMEM154Q6P9G4 183 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 RFX8Q6ZV50 586 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 UBL4BQ8N7F7 174 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 ERP27Q96DN0 273 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 PITPNM3Q9BZ71 974 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 ERVK-5Q9HDB9 667 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 DLGAP2Q9P1A6 1054 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 RABGAP1Q9Y3P9 1069 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 MYH4Q9Y623 1939 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 SRRM3A6NNA2 597 aaPredicted RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 ASAP2O43150 1006 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 SPAG7O75391 227 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 CFBP00751 764 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 AGTP01019 485 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 TMED2Q15363 201 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 SIAH1Q8IUQ4 282 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 MTUS1Q9ULD2 1270 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 SNX3O60493 162 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 RTN2O75298 545 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 SLMAPQ14BN4 828 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 HP1BP3Q5SSJ5 553 aaPredicted RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 CC2D2BQ6DHV5 1058 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 CCDC137Q6PK04 289 aaKnown RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 FRMD5Q7Z6J6 570 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 PHLDB2Q86SQ0 1253 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 TEKT4Q8WW24 435 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 HAO1Q9UJM8 370 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 ARL2BPQ9Y2Y0 163 aa10.34□□□□□ -0.75
VCAN-210ENST00000513960 ZBTB12Q9Y330 459 aaPredicted RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 BZW2Q9Y6E2 419 aaKnown RBP10.34□□□□□ -0.75
VCAN-210ENST00000513960 MSH4O15457 936 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 NPM3O75607 178 aaKnown RBP10.33□□□□□ -0.76
VCAN-210ENST00000513960 FAM13AO94988 1023 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 RARAP10276 462 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 RANBP1P43487 201 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 MIS18BP1Q6P0N0 1132 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.33□□□□□ -0.76
VCAN-210ENST00000513960 METTL14Q9HCE5 456 aaKnown RBP10.33□□□□□ -0.76
VCAN-210ENST00000513960 LRRC37AA6NMS7 1700 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 WDR91A4D1P6 747 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 PDXKO00764 312 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 ENTPD3O75355 529 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 SPATA31C1P0DKV0 1188 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 CASP5P51878 434 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 STAT2P52630 851 aa10.33□□□□□ -0.76
VCAN-210ENST00000513960 ZBTB16Q05516 673 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms