RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 DSC1Q08554 894 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 SNW1Q13573 536 aaKnown RBP12.29□□□□□ -0.44
DDX41-216ENST00000513562 MLF2Q15773 248 aaPredicted RBP12.29□□□□□ -0.44
DDX41-216ENST00000513562 XKR3Q5GH77 459 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 UBXN11Q5T124 520 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 LILRA6Q6PI73 481 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 PARM1Q6UWI2 310 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 SPATA31D4Q6ZUB0 917 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 KSR1Q8IVT5 923 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 COLGALT2Q8IYK4 626 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 GPR65Q8IYL9 337 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 ST13P5Q8NFI4 369 aaPredicted RBP12.29□□□□□ -0.44
DDX41-216ENST00000513562 RDM1Q8NG50 284 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 SLC5A5Q92911 643 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 NLRP4Q96MN2 994 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 FAM217BQ9NTX9 383 aaPredicted RBP12.29□□□□□ -0.44
DDX41-216ENST00000513562 ZSCAN32Q9NX65 697 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 BRPF3Q9ULD4 1205 aa12.29□□□□□ -0.44
DDX41-216ENST00000513562 MTF2Q9Y483 593 aaPredicted RBP12.29□□□□□ -0.44
DDX41-216ENST00000513562 EVPLQ92817 2033 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 TPRP12270 2363 aaKnown RBP12.28□□□□□ -0.44
DDX41-216ENST00000513562 DCDC2BA2VCK2 349 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 GOLGA8AA7E2F4 631 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 GOLGA8BA8MQT2 603 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 F8W810 466 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 EDIL3O43854 480 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 GAS2O43903 313 aaKnown RBP12.28□□□□□ -0.44
DDX41-216ENST00000513562 NCLP19338 710 aaKnown RBP12.28□□□□□ -0.44
DDX41-216ENST00000513562 FSHRP23945 695 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 HOXA11P31270 313 aaPredicted RBP12.28□□□□□ -0.44
DDX41-216ENST00000513562 OR1G1P47890 313 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 UBXN2BQ14CS0 331 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 NECTIN1Q15223 517 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 LRCH2Q5VUJ6 765 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 CREB3L3Q68CJ9 461 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 RSPO2Q6UXX9 243 aaPredicted RBP12.28□□□□□ -0.44
DDX41-216ENST00000513562 PALB2Q86YC2 1186 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 MBOAT7Q96N66 472 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 SH2D3AQ9BRG2 576 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 TEKT3Q9BXF9 490 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 C6orf50Q9HD87 102 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 LTB4R2Q9NPC1 389 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 UBN1Q9NPG3 1134 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.28□□□□□ -0.44
DDX41-216ENST00000513562 FNIP2Q9P278 1114 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 CDH7Q9ULB5 785 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 USP18Q9UMW8 372 aa12.28□□□□□ -0.44
DDX41-216ENST00000513562 FANCMQ8IYD8 2048 aa12.27□□□□□ -0.44
DDX41-216ENST00000513562 FAM170BA6NMN3 283 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 TBC1D4O60343 1298 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 ZMYND10O75800 440 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 PSMD10O75832 226 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 CDC27P30260 824 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 RCAN1P53805 252 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 SLC44A4Q53GD3 710 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 B3GNT9Q6UX72 402 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 MTSS1LQ765P7 747 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 SMG8Q8ND04 991 aaKnown RBP12.27□□□□□ -0.45
DDX41-216ENST00000513562 CNNM3Q8NE01 707 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 CCDC12Q8WUD4 166 aaPredicted RBP12.27□□□□□ -0.45
DDX41-216ENST00000513562 JPH2Q9BR39 696 aaPredicted RBP12.27□□□□□ -0.45
DDX41-216ENST00000513562 MINDY3Q9H8M7 445 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 PARD6AQ9NPB6 346 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 PRMT8Q9NR22 394 aaPredicted RBP12.27□□□□□ -0.45
DDX41-216ENST00000513562 COL4A3BPQ9Y5P4 624 aa12.27□□□□□ -0.45
DDX41-216ENST00000513562 COL4A3Q01955 1670 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 ARL5CA6NH57 179 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 GNA11P29992 359 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 MLH1P40692 756 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 EXOSC10Q01780 885 aaKnown RBP12.26□□□□□ -0.45
DDX41-216ENST00000513562 PFKPQ01813 784 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 ANO5Q75V66 913 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 MIER3Q7Z3K6 550 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 GJA10Q969M2 543 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 CLDN23Q96B33 292 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 CCDC136Q96JN2 1154 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 B3GALT6Q96L58 329 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 GPR62Q9BZJ7 368 aa12.26□□□□□ -0.45
DDX41-216ENST00000513562 KLF18A0A0U1RQI7 1052 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 NR1I2O75469 434 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 ITGA4P13612 1032 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 CD72P21854 359 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 TARSP26639 723 aaKnown RBP12.25□□□□□ -0.45
DDX41-216ENST00000513562 RPS9P46781 194 aaKnown RBP12.25□□□□□ -0.45
DDX41-216ENST00000513562 SCNN1GP51170 649 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 USP11P51784 963 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 CREMQ03060 361 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 USP41Q3LFD5 358 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 ZBTB41Q5SVQ8 909 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 FUT10Q6P4F1 479 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 TSSK4Q6SA08 328 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 SRGAP1Q7Z6B7 1085 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 GRASPQ7Z6J2 395 aaPredicted RBP12.25□□□□□ -0.45
DDX41-216ENST00000513562 GLYCTKQ8IVS8 523 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 BICD2Q8TD16 824 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 FGF13Q92913 245 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 TCEANC2Q96MN5 208 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 GAD1Q99259 594 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 FAM126AQ9BYI3 521 aaPredicted RBP12.25□□□□□ -0.45
DDX41-216ENST00000513562 RNF39Q9H2S5 420 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms