RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CNOT8Q9UFF9 292 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 TRIM13O60858 407 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ATP5BP06576 529 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 PSMA2P25787 234 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 RGS2P41220 211 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 KCNQ4P56696 695 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 FCHO2Q0JRZ9 810 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 PDIA2Q13087 525 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 OR6B2Q6IFH4 312 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 IRGCQ6NXR0 463 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 IFNL3Q8IZI9 196 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 CCDC17Q96LX7 622 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 CTNNAL1Q9UBT7 734 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 VSNL1P62760 191 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 UBE3AQ05086 875 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 RESTQ13127 1097 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 CCDC137Q6PK04 289 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 COL23A1Q86Y22 540 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 LRRC49Q8IUZ0 686 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 FAM9CQ8IZT9 166 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 PAGE5Q96GU1 130 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 ABHD8Q96I13 439 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 OSBPL10Q9BXB5 764 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 RPAP3Q9H6T3 665 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 ADAM22Q9P0K1 906 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 KLHL8Q9P2G9 620 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 HPCAL4Q9UM19 191 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 CBFA2T3O75081 653 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 MMP1P03956 469 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 CYP4A11Q02928 519 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 CYP4A22Q5TCH4 519 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 SFR1Q86XK3 245 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 STAG2Q8N3U4 1231 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 FAR2Q96K12 515 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 HMG20AQ9NP66 347 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 PCDH11XQ9BZA7 1347 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 TTLL1O95922 423 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 BCL10O95999 233 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 KCNA2P16389 499 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 PSMC6P62333 389 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 TRMT5Q32P41 509 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 KIAA1755Q5JYT7 1200 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 UNC13DQ70J99 1090 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 SVOPQ8N4V2 548 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 EFHBQ8N7U6 833 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 WDR60Q8WVS4 1066 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 PRMT1Q99873 361 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 ANAPC7Q9UJX3 599 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 RIMS2Q9UQ26 1411 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 KITP10721 976 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 PPIDQ08752 370 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 IZUMO3Q5VZ72 239 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 ARHGAP17Q68EM7 881 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 C11orf88Q6PI97 169 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 OLFML1Q6UWY5 402 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 RINLQ6ZS11 566 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 TOGARAM2Q6ZUX3 1019 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 SMCR8Q8TEV9 937 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 SLC7A3Q8WY07 619 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 KRT35Q92764 455 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 ACAP3Q96P50 834 aa11.85□□□□□ -0.51
LIMCH1-208ENST00000508501 ADGRF5Q8IZF2 1346 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 WDR17Q8IZU2 1322 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 GUCA1CO95843 209 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 MLH1P40692 756 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 ADARP55265 1226 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 NFRKBQ6P4R8 1299 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 TRIM62Q9BVG3 475 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 PRRG3Q9BZD7 231 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 VPS33BQ9H267 617 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 AS3MTQ9HBK9 375 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 SMARCAL1Q9NZC9 954 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 H2AFYO75367 372 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 COPAP53621 1224 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 PLEKHA7Q6IQ23 1121 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 ANKS3Q6ZW76 656 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 AMNQ9BXJ7 453 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 MLXIPQ9HAP2 919 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 ARHGEF3Q9NR81 526 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 TMEM161AQ9NX61 479 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 LRRIQ4A6NIV6 560 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 TRPC5OSA6NMA1 111 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 A8MXQ7 604 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 LRRN2O75325 713 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 PIK3R1P27986 724 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 NCF4Q15080 339 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 MTFR1Q15390 333 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 KRT28Q7Z3Y7 464 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 RMI1Q9H9A7 625 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 KMT5AQ9NQR1 393 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 SELENONQ9NZV5 590 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 KLHL3Q9UH77 587 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 SAP30BPQ9UHR5 308 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 DAPK2Q9UIK4 370 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 SSU72P8A0A1W2PR75 194 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 COPB2P35606 906 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 PKP1Q13835 747 aa11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 LBRQ14739 615 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 PKN2Q16513 984 aaKnown RBP11.84□□□□□ -0.51
LIMCH1-208ENST00000508501 RESP18Q5W5W9 173 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms